# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gi9A 56 2.87e-15 2qmtA 56 3.89e-15 2igd 61 4.62e-15 2igd 2igdA 61 4.62e-15 d.15.7.1 37821 2on8A 56 1.31e-13 2go8A 122 7.16e-02 2uubJ 105 8.47e-01 d.58.15.1 139941 3bm1A 183 1.22e+00 1iznB 277 2.49e+00 e.43.1.2 83848 1ufmA 84 2.58e+00 a.4.5.47 107816 1bkjA 240 3.80e+00 1bkjA d.90.1.1 40243 2hfnA 153 4.78e+00 1nslA 184 5.77e+00 d.108.1.1 86137 2r3sA 335 6.65e+00 2irfG 113 7.18e+00 2irfG a.4.5.23 16185 1iatA 557 7.95e+00 1dqrA c.80.1.2 62123 1j98A 157 8.19e+00 1j98A d.185.1.2 62755 2cksA 306 8.35e+00 2joeA 139 8.56e+00 1dekA 241 8.63e+00 1dekA c.37.1.1 31842 1c0eA 157 1.04e+01 1dg9A c.44.1.1 32638 1o22A 170 1.05e+01 d.238.1.1 86557 1lxnA 99 1.08e+01 d.58.48.1 84737 2hz5A 106 1.12e+01 2v5jA 287 1.13e+01 2fe3A 145 1.19e+01 2dqlA 115 1.19e+01 3c6fA 153 1.20e+01 3cjsA 60 1.23e+01 1y96B 85 1.27e+01 2pbzA 320 1.39e+01 1co6A 107 1.55e+01 1ycc a.3.1.1 15894 3cjnA 162 1.57e+01 2bjoA 136 1.58e+01 1y8cA 246 1.61e+01 c.66.1.43 116563 1zy9A 564 1.61e+01 b.30.5.11,c.1.8.13 125813,125814 1vf8A 377 1.68e+01 c.1.8.5,d.26.3.1 120029,120030 2cwdA 161 1.73e+01 2cyyA 151 1.75e+01 a.4.5.32,d.58.4.2 131028,131029 2pd1A 104 1.87e+01 1ri7A 171 1.89e+01 a.4.5.32,d.58.4.2 97504,97505 1ugjA 141 1.90e+01 b.41.1.3 107826 1t77A 414 1.94e+01 a.169.1.1,b.55.1.6 112290,112291 2b95A 106 1.99e+01 2r01A 210 2.03e+01 2cmxA 118 2.08e+01 2vqcA 118 2.08e+01 2cxnA 557 2.10e+01 1zthA 258 2.12e+01 1u1iA 392 2.13e+01 c.2.1.3,d.81.1.3 107582,107583 1hkkA 364 2.22e+01 c.1.8.5,d.26.3.1 90634,90635 1hz6A 72 2.27e+01 2ptl d.15.7.1 61429 1ne2A 200 2.31e+01 c.66.1.32 85586 1y4oA 104 2.38e+01 1owqA 361 2.45e+01 c.1.8.5,d.26.3.1 104041,104042 1fjgJ 105 2.47e+01 1fjfJ d.58.15.1 39330 1o1zA 234 2.49e+01 c.1.18.3 86555 1wb0A 445 2.52e+01 c.1.8.5,d.26.3.1 120825,120826 2za4B 90 2.56e+01 1mi1A 414 2.62e+01 a.169.1.1,b.55.1.6 79137,79138 1x2mA 64 2.63e+01 a.4.1.1 121645 1u0fA 564 2.69e+01 c.80.1.2 112912 2d1pA 140 2.81e+01 c.114.1.1 131136 1jaeA 471 2.86e+01 b.71.1.1,c.1.8.1 27773,28760 1lqvC 33 2.91e+01 g.32.1.1 74208 2pi6A 361 2.91e+01 4ubpA 101 2.95e+01 1ubpA d.8.1.1 37352 2bw0A 329 2.99e+01 b.46.1.1,c.65.1.1 129303,129304 1t6gC 184 3.09e+01 b.29.1.11 106569 2vktA 289 3.10e+01 1e9lA 377 3.13e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1c4zA 358 3.21e+01 1c4zA d.148.1.1 41766 1a7j 290 3.27e+01 1a7j 1a7jA 290 3.27e+01 c.37.1.6 31952 1zldA 120 3.28e+01 1ml8A 134 3.28e+01 d.227.1.2 85013 3co4A 312 3.30e+01 1pueE 89 3.30e+01 1awcA a.4.5.21 16165 2al6A 375 3.32e+01 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 3proC 166 3.40e+01 3proC d.52.1.1,d.52.1.1 38812,38813 3c0fB 91 3.43e+01 2cb2A 318 3.43e+01 d.58.4.17 130174 1phkA 298 3.43e+01 d.144.1.7 41635 1xxaA 78 3.43e+01 1xxaA d.74.2.1 39700 2b7eA 59 3.51e+01 1sr9A 644 3.59e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 3bcwA 123 3.60e+01 1lfwA 470 3.61e+01 c.56.5.4,d.58.19.1 77942,77943 2q4aA 330 3.64e+01 b.82.2.8 139839 1theA 260 3.64e+01 1theB d.3.1.1 37056 2jn6A 97 3.65e+01 1qo3C 137 3.71e+01 1qo3C d.169.1.1 42350 1ow1A 195 3.76e+01 b.131.1.3 93625 2j44A 217 3.77e+01 1uilA 113 3.86e+01 d.50.1.1 113255 2fk9A 157 3.91e+01 1sw5A 275 3.96e+01 c.94.1.1 106069 2jsxA 95 3.97e+01 1ftrA 296 4.00e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1juvA 193 4.14e+01 c.71.1.1 90912 1s0pA 176 4.31e+01 a.192.1.1 98300 1fukA 165 4.35e+01 1fukA c.37.1.19 32409 1x0pA 143 4.36e+01 d.58.10.2 121552 1dzfA 215 4.38e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1mszA 86 4.39e+01 d.68.7.1 79428 1ni9A 338 4.42e+01 e.7.1.2 85739 2ifxA 114 4.55e+01 2raqA 97 4.55e+01 1ysjA 404 4.56e+01 c.56.5.4,d.58.19.1 123975,123976 2dp9A 124 4.66e+01 b.122.1.5 131609 2o1mA 258 4.70e+01 2yydA 345 4.75e+01 2zodA 345 4.75e+01 2e1nA 138 4.79e+01 1yn4A 99 4.82e+01 2ad6B 69 4.85e+01 a.137.2.1 126569 2nnnA 140 4.86e+01 2r6oA 294 4.96e+01 2hzmA 212 5.01e+01 3cbjA 266 5.04e+01 1q0pA 223 5.14e+01 c.62.1.1 95507 1gmyA 261 5.24e+01 d.3.1.1 76236 1tr9A 341 5.28e+01 c.1.8.7 112617 1txoA 237 5.36e+01 d.219.1.1 112781 2dc4A 165 5.46e+01 1vkwA 218 5.46e+01 d.90.1.2 108695 2bs2B 241 5.47e+01 a.1.2.1,d.15.4.2 129033,129034 1otvA 259 5.50e+01 a.132.1.4 93526 1mrzA 293 5.51e+01 b.43.5.1,c.26.1.3 91452,91453 3cnuA 116 5.53e+01 2fb0A 94 5.60e+01 1dg9A 157 5.61e+01 1dg9A c.44.1.1 32637 1sw2A 275 5.68e+01 c.94.1.1 106064 1g8mA 593 5.73e+01 1g8mA c.24.1.3,c.97.1.4 60371,60372 1wi9A 72 5.79e+01 a.4.5.47 114663 2pg4A 95 5.97e+01 1usgA 346 5.98e+01 c.93.1.1 99864 2a7kA 250 6.13e+01 c.14.1.3 126341 1ufyA 122 6.14e+01 d.79.1.2 88489 2aehA 369 6.15e+01 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 1ci0A 228 6.24e+01 1ci0A b.45.1.1 25750 1g97A 459 6.38e+01 1fwyA b.81.1.4,c.68.1.5 60394,60395 1hm9A 468 6.53e+01 b.81.1.4,c.68.1.5 65866,65867 2cm1A 260 6.53e+01 2oxnA 340 6.53e+01 1ka9H 200 6.63e+01 c.23.16.1 77308 1m0uA 249 6.64e+01 a.45.1.1,c.47.1.5 78359,78360 1tuvA 114 6.68e+01 d.58.4.11 112665 1edzA 320 6.70e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1r6yA 115 6.72e+01 d.58.4.11 111711 1e58A 249 6.81e+01 1qhfA c.60.1.1 59262 1fiuA 286 6.86e+01 1fiuA c.52.1.10 33317 2r85A 334 6.91e+01 1u9cA 224 6.92e+01 c.23.16.2 113234 1fvpA 231 7.00e+01 1nfp c.1.16.2 29556 3bqsA 93 7.06e+01 1knvA 293 7.09e+01 c.52.1.7 68707 1s3iA 310 7.23e+01 b.46.1.1,c.65.1.1 98435,98436 2owaA 138 7.27e+01 1umpA 631 7.29e+01 a.102.4.2,a.102.4.2 99619,99620 2cibA 455 7.29e+01 5hpgA 84 7.32e+01 5hpgA g.14.1.1 44642 2i15A 135 7.33e+01 2qdqA 50 7.39e+01 1jyoA 130 7.58e+01 d.198.1.1 67483 2qmwA 267 7.59e+01 2iorA 235 7.61e+01 1zhsA 113 7.62e+01 2sqcA 631 7.67e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1u6lA 149 7.68e+01 d.32.1.7 113067 2jc7A 244 7.68e+01 1wubA 178 7.70e+01 b.61.6.1 114891 2ddxA 333 7.78e+01 2hzfA 114 7.80e+01 2qyxA 238 7.86e+01 1y0zA 330 7.88e+01 b.82.2.8 116317 1itxA 419 7.94e+01 c.1.8.5,d.26.3.1 71425,71426 2oy9A 98 7.96e+01