# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2igd 61 4.31e-15 2igd 2igdA 61 4.31e-15 d.15.7.1 37821 2gi9A 56 4.80e-15 2qmtA 56 4.80e-15 2on8A 56 2.00e-13 2go8A 122 2.74e-01 1ufmA 84 1.83e+00 a.4.5.47 107816 3cjsA 60 2.03e+00 2b7eA 59 2.09e+00 2uubJ 105 3.49e+00 d.58.15.1 139941 2irfG 113 3.64e+00 2irfG a.4.5.23 16185 1bkjA 240 3.64e+00 1bkjA d.90.1.1 40243 1fjgJ 105 4.28e+00 1fjfJ d.58.15.1 39330 1dekA 241 4.37e+00 1dekA c.37.1.1 31842 3bm1A 183 5.34e+00 1c0eA 157 5.92e+00 1dg9A c.44.1.1 32638 1iznB 277 6.55e+00 e.43.1.2 83848 2hfnA 153 6.81e+00 1j98A 157 6.93e+00 1j98A d.185.1.2 62755 2cwdA 161 7.39e+00 2nxcA 254 7.58e+00 c.66.1.39 138739 2pbzA 320 7.69e+00 2r01A 210 7.75e+00 3c6fA 153 1.02e+01 2bjoA 136 1.16e+01 1y8cA 246 1.19e+01 c.66.1.43 116563 2r3sA 335 1.22e+01 1uilA 113 1.22e+01 d.50.1.1 113255 1nslA 184 1.24e+01 d.108.1.1 86137 1zy9A 564 1.32e+01 b.30.5.11,c.1.8.13 125813,125814 1iatA 557 1.36e+01 1dqrA c.80.1.2 62123 1ne2A 200 1.37e+01 c.66.1.32 85586 1s3iA 310 1.47e+01 b.46.1.1,c.65.1.1 98435,98436 2bw0A 329 1.48e+01 b.46.1.1,c.65.1.1 129303,129304 1ysjA 404 1.50e+01 c.56.5.4,d.58.19.1 123975,123976 1dg9A 157 1.53e+01 1dg9A c.44.1.1 32637 1lfwA 470 1.73e+01 c.56.5.4,d.58.19.1 77942,77943 1knvA 293 1.76e+01 c.52.1.7 68707 1co6A 107 1.96e+01 1ycc a.3.1.1 15894 1x2mA 64 2.02e+01 a.4.1.1 121645 1ri7A 171 2.10e+01 a.4.5.32,d.58.4.2 97504,97505 1c4zA 358 2.16e+01 1c4zA d.148.1.1 41766 1y0zA 330 2.16e+01 b.82.2.8 116317 2ifxA 114 2.20e+01 1lqvC 33 2.32e+01 g.32.1.1 74208 2cyyA 151 2.34e+01 a.4.5.32,d.58.4.2 131028,131029 2nnnA 140 2.40e+01 2pi6A 361 2.43e+01 1edzA 320 2.51e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 2inpE 118 2.58e+01 1u1iA 392 2.61e+01 c.2.1.3,d.81.1.3 107582,107583 2cksA 306 2.72e+01 1otvA 259 2.72e+01 a.132.1.4 93526 2dqlA 115 2.78e+01 2q4aA 330 2.85e+01 b.82.2.8 139839 1qo3C 137 2.93e+01 1qo3C d.169.1.1 42350 2za4B 90 2.99e+01 2dp9A 124 3.02e+01 b.122.1.5 131609 2cxnA 557 3.04e+01 2cmxA 118 3.04e+01 2vqcA 118 3.04e+01 4ubpA 101 3.09e+01 1ubpA d.8.1.1 37352 2ad6B 69 3.25e+01 a.137.2.1 126569 3bcwA 123 3.26e+01 2hz5A 106 3.31e+01 1xwwA 157 3.36e+01 2fk9A 157 3.53e+01 1jaeA 471 3.58e+01 b.71.1.1,c.1.8.1 27773,28760 1ydlA 79 3.61e+01 d.295.1.1 123001 3bfxA 296 3.67e+01 1umpA 631 3.74e+01 a.102.4.2,a.102.4.2 99619,99620 1s0pA 176 3.76e+01 a.192.1.1 98300 1o22A 170 3.89e+01 d.238.1.1 86557 2sqcA 631 3.91e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 2iorA 235 3.93e+01 2r6oA 294 3.93e+01 1usgA 346 4.06e+01 c.93.1.1 99864 2b95A 106 4.10e+01 3co4A 312 4.10e+01 5hpgA 84 4.12e+01 5hpgA g.14.1.1 44642 3cjnA 162 4.14e+01 2qyxA 238 4.15e+01 3bdiA 207 4.15e+01 2p12A 176 4.27e+01 1vkwA 218 4.31e+01 d.90.1.2 108695 3cnuA 116 4.49e+01 2v5jA 287 4.51e+01 1uxtA 501 4.56e+01 c.82.1.1 108125 1uzcA 71 4.61e+01 a.159.2.1 100222 1o1zA 234 4.70e+01 c.1.18.3 86555 1dzfA 215 4.71e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1qg8A 255 4.75e+01 1qg8A c.68.1.1 34505 1y96B 85 4.81e+01 1u0fA 564 4.94e+01 c.80.1.2 112912 3cz6A 168 5.01e+01 1owqA 361 5.02e+01 c.1.8.5,d.26.3.1 104041,104042 2fe3A 145 5.09e+01 2a7kA 250 5.15e+01 c.14.1.3 126341 1ufyA 122 5.19e+01 d.79.1.2 88489 1itxA 419 5.23e+01 c.1.8.5,d.26.3.1 71425,71426 1ezwA 349 5.23e+01 1ezwA c.1.16.3 29558 2bs2B 241 5.25e+01 a.1.2.1,d.15.4.2 129033,129034 1txoA 237 5.26e+01 d.219.1.1 112781 1w0mA 226 5.36e+01 c.1.1.1 109027 1ftrA 296 5.37e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1wubA 178 5.40e+01 b.61.6.1 114891 1ekqA 272 5.42e+01 1c3qA c.72.1.2 34941 2dk5A 91 5.63e+01 2jsxA 95 5.66e+01 8pchA 220 5.82e+01 1cs8A 2cibA 455 5.87e+01 1waaA 93 5.93e+01 2hzfA 114 5.97e+01 1ay7B 89 6.01e+01 1ay7B c.9.1.1 30836 1aocA 175 6.03e+01 1aocA g.17.1.5 44817 1jksA 294 6.08e+01 d.144.1.7 71710 1zthA 258 6.12e+01 2al6A 375 6.18e+01 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 1x0pA 143 6.20e+01 d.58.10.2 121552 1e58A 249 6.21e+01 1qhfA c.60.1.1 59262 2jn6A 97 6.29e+01 1z0nA 96 6.51e+01 1w5dA 462 6.66e+01 e.3.1.3 120642 2qdqA 50 6.69e+01 1z0mA 96 6.74e+01 2f4mA 295 6.76e+01 1lxnA 99 6.90e+01 d.58.48.1 84737 1g8mA 593 6.97e+01 1g8mA c.24.1.3,c.97.1.4 60371,60372 2qvbA 297 7.02e+01 1s9uA 207 7.03e+01 a.184.1.1 105390 1hz6A 72 7.05e+01 2ptl d.15.7.1 61429 1e9lA 377 7.06e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 2i15A 135 7.12e+01 1tqjA 230 7.21e+01 c.1.2.2 107228 2qtwA 124 7.26e+01 1hkkA 364 7.27e+01 c.1.8.5,d.26.3.1 90634,90635 2jt1A 77 7.27e+01 2pmwA 126 7.39e+01 1t77A 414 7.49e+01 a.169.1.1,b.55.1.6 112290,112291 2o2cA 613 7.51e+01 2cpcA 113 7.57e+01 1nycA 111 7.58e+01 b.61.2.2 92336 2o2iA 300 7.62e+01 1y4oA 104 7.69e+01 2fm9A 215 7.73e+01 a.257.1.1 133770 2cm1A 260 7.80e+01 2vktA 289 7.81e+01 1pueE 89 7.85e+01 1awcA a.4.5.21 16165 2pn6A 150 7.86e+01 2hjpA 290 7.89e+01 2pg4A 95 7.96e+01