# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gi9A 56 6.10e-15 2qmtA 56 6.10e-15 2igd 61 7.20e-15 2igd 2igdA 61 7.20e-15 d.15.7.1 37821 2on8A 56 2.98e-13 2go8A 122 3.57e-01 1ufmA 84 6.82e-01 a.4.5.47 107816 1bkjA 240 8.90e-01 1bkjA d.90.1.1 40243 1c0eA 157 1.39e+00 1dg9A c.44.1.1 32638 2b7eA 59 1.44e+00 3bm1A 183 2.35e+00 1dekA 241 2.48e+00 1dekA c.37.1.1 31842 3cjsA 60 2.48e+00 2irfG 113 2.76e+00 2irfG a.4.5.23 16185 1ne2A 200 2.77e+00 c.66.1.32 85586 1dg9A 157 3.31e+00 1dg9A c.44.1.1 32637 2uubJ 105 3.90e+00 d.58.15.1 139941 1nslA 184 4.55e+00 d.108.1.1 86137 1lfwA 470 5.23e+00 c.56.5.4,d.58.19.1 77942,77943 2nnnA 140 5.42e+00 2ifxA 114 6.02e+00 1xwwA 157 6.58e+00 2hfnA 153 6.68e+00 2bw0A 329 6.70e+00 b.46.1.1,c.65.1.1 129303,129304 2cwdA 161 7.17e+00 1iznB 277 7.26e+00 e.43.1.2 83848 1otvA 259 7.41e+00 a.132.1.4 93526 1x2mA 64 7.48e+00 a.4.1.1 121645 1s3iA 310 7.73e+00 b.46.1.1,c.65.1.1 98435,98436 3c6fA 153 7.87e+00 1y96B 85 8.05e+00 2r3sA 335 8.53e+00 2pbzA 320 8.58e+00 1y0zA 330 9.07e+00 b.82.2.8 116317 1uilA 113 9.45e+00 d.50.1.1 113255 1co6A 107 9.70e+00 1ycc a.3.1.1 15894 3bdiA 207 9.99e+00 1fjgJ 105 1.00e+01 1fjfJ d.58.15.1 39330 2dqlA 115 1.04e+01 2r01A 210 1.04e+01 1o22A 170 1.12e+01 d.238.1.1 86557 2fe3A 145 1.19e+01 2p12A 176 1.22e+01 2q4aA 330 1.26e+01 b.82.2.8 139839 1dzfA 215 1.27e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1txoA 237 1.30e+01 d.219.1.1 112781 1ufyA 122 1.33e+01 d.79.1.2 88489 1iatA 557 1.34e+01 1dqrA c.80.1.2 62123 1zy9A 564 1.36e+01 b.30.5.11,c.1.8.13 125813,125814 1j98A 157 1.42e+01 1j98A d.185.1.2 62755 1ysjA 404 1.43e+01 c.56.5.4,d.58.19.1 123975,123976 1t77A 414 1.45e+01 a.169.1.1,b.55.1.6 112290,112291 1u1iA 392 1.65e+01 c.2.1.3,d.81.1.3 107582,107583 2bjoA 136 1.67e+01 1lqvC 33 1.73e+01 g.32.1.1 74208 1zthA 258 1.76e+01 2sqcA 631 1.77e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 2pn6A 150 1.81e+01 1jaeA 471 1.88e+01 b.71.1.1,c.1.8.1 27773,28760 1usgA 346 1.91e+01 c.93.1.1 99864 1y8cA 246 1.98e+01 c.66.1.43 116563 2cm1A 260 2.16e+01 2cksA 306 2.27e+01 2nxcA 254 2.31e+01 c.66.1.39 138739 1umpA 631 2.34e+01 a.102.4.2,a.102.4.2 99619,99620 2inpE 118 2.41e+01 3cjnA 162 2.43e+01 2fk9A 157 2.56e+01 2e7xA 150 2.56e+01 3bcwA 123 2.58e+01 4ubpA 101 2.63e+01 1ubpA d.8.1.1 37352 2bs2B 241 2.63e+01 a.1.2.1,d.15.4.2 129033,129034 1aocA 175 2.64e+01 1aocA g.17.1.5 44817 2f4mA 295 2.65e+01 2al6A 375 2.68e+01 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 2za4B 90 2.73e+01 2ad6B 69 2.77e+01 a.137.2.1 126569 2cxnA 557 2.84e+01 1edzA 320 2.87e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 2b95A 106 2.91e+01 1ekqA 272 2.93e+01 1c3qA c.72.1.2 34941 1mszA 86 2.96e+01 d.68.7.1 79428 1w5dA 462 2.99e+01 e.3.1.3 120642 1ri7A 171 3.01e+01 a.4.5.32,d.58.4.2 97504,97505 2i15A 135 3.02e+01 1wubA 178 3.06e+01 b.61.6.1 114891 1phkA 298 3.18e+01 d.144.1.7 41635 1ni9A 338 3.20e+01 e.7.1.2 85739 1uzcA 71 3.24e+01 a.159.2.1 100222 2cyyA 151 3.27e+01 a.4.5.32,d.58.4.2 131028,131029 2cmxA 118 3.31e+01 2vqcA 118 3.31e+01 1c4zA 358 3.33e+01 1c4zA d.148.1.1 41766 1vkwA 218 3.36e+01 d.90.1.2 108695 2qtwA 124 3.39e+01 2pmwA 126 3.42e+01 1x0pA 143 3.43e+01 d.58.10.2 121552 1t3tA 1303 3.43e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1s0pA 176 3.46e+01 a.192.1.1 98300 2dp9A 124 3.48e+01 b.122.1.5 131609 2pi6A 361 3.54e+01 1sw2A 275 3.62e+01 c.94.1.1 106064 3bpvA 138 3.66e+01 2hz5A 106 3.73e+01 1sw5A 275 3.74e+01 c.94.1.1 106069 2o1mA 258 3.90e+01 1lj9A 144 3.91e+01 a.4.5.28 78035 2aehA 369 4.00e+01 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 1lm5A 214 4.01e+01 d.211.2.1 74029 2cosA 54 4.04e+01 a.5.2.1 130683 2jc7A 244 4.09e+01 1u0fA 564 4.12e+01 c.80.1.2 112912 1ftrA 296 4.33e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1mi1A 414 4.34e+01 a.169.1.1,b.55.1.6 79137,79138 3bv0A 437 4.36e+01 1o1zA 234 4.36e+01 c.1.18.3 86555 3cnuA 116 4.42e+01 2jsxA 95 4.59e+01 1g97A 459 4.62e+01 1fwyA b.81.1.4,c.68.1.5 60394,60395 1f5vA 240 4.63e+01 1bkjA d.90.1.1 40255 1hm9A 468 4.64e+01 b.81.1.4,c.68.1.5 65866,65867 2cpcA 113 4.67e+01 1rr7A 129 4.74e+01 a.4.1.14 105075 1fseA 74 4.74e+01 1fseA a.4.6.2 60000 1vimA 200 4.92e+01 c.80.1.3 100758 3bfxA 296 4.92e+01 2e1nA 138 4.92e+01 2hjpA 290 4.99e+01 1jksA 294 4.99e+01 d.144.1.7 71710 1owqA 361 5.01e+01 c.1.8.5,d.26.3.1 104041,104042 1q5xA 161 5.08e+01 c.8.7.1 95947 2v5jA 287 5.19e+01 3c0fB 91 5.20e+01 2z0aA 79 5.22e+01 2cibA 455 5.33e+01 1ezwA 349 5.33e+01 1ezwA c.1.16.3 29558 5hpgA 84 5.38e+01 5hpgA g.14.1.1 44642 3bf7A 255 5.38e+01 2pg4A 95 5.42e+01 1dmtA 696 5.44e+01 1dmtA d.92.1.4 40296 1wi9A 72 5.45e+01 a.4.5.47 114663 2jvuA 104 5.45e+01 1ay7B 89 5.47e+01 1ay7B c.9.1.1 30836 2bv6A 142 5.49e+01 1y4oA 104 5.51e+01 1nh2D 121 5.58e+01 a.32.1.1,b.56.1.1 91876,91877 3bqsA 93 5.74e+01 2dg7A 195 5.90e+01 2i7hA 189 5.91e+01 3co4A 312 5.91e+01 2zkqn 56 5.94e+01 1ydlA 79 5.97e+01 d.295.1.1 123001 1itxA 419 6.10e+01 c.1.8.5,d.26.3.1 71425,71426 1sw5B 275 6.12e+01 c.94.1.1 106070 1qo3C 137 6.23e+01 1qo3C d.169.1.1 42350 2o2cA 613 6.31e+01 1bqbA 301 6.33e+01 1hyt d.92.1.2 58962 2jn6A 97 6.33e+01 2d8rA 99 6.36e+01 1mzhA 225 6.44e+01 c.1.10.1 79698 2dx0A 138 6.48e+01 1ur3M 319 6.54e+01 c.1.7.1 99806 1qhtA 775 6.57e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2uuuA 584 6.60e+01 2r78A 117 6.62e+01 1u2pA 163 6.62e+01 1w2wA 211 6.67e+01 c.124.1.5 109130 2j0wA 449 6.75e+01 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 3c2eA 294 6.80e+01 1gr0A 367 6.87e+01 c.2.1.3,d.81.1.3 70379,70380 1ytfD 121 6.88e+01 1ytfD a.32.1.1,b.56.1.1 16998,27011 2zodA 345 6.89e+01 2yydA 345 6.92e+01 1fukA 165 6.92e+01 1fukA c.37.1.19 32409 1fiuA 286 6.93e+01 1fiuA c.52.1.10 33317 2qmoA 220 6.97e+01 1waaA 93 7.00e+01 2is8A 164 7.19e+01 1q0pA 223 7.20e+01 c.62.1.1 95507 3bs9A 87 7.22e+01 2hykA 245 7.22e+01 2qdqA 50 7.25e+01 1k07A 263 7.27e+01 d.157.1.1 77218 1t6gC 184 7.29e+01 b.29.1.11 106569 1vloA 381 7.34e+01 b.44.2.1,d.250.1.1 108838,108839 1knvA 293 7.36e+01 c.52.1.7 68707 2j44A 217 7.36e+01 2raqA 97 7.44e+01 1brmA 367 7.50e+01 1brmA c.2.1.3,d.81.1.1 30030,39945 1f06A 320 7.64e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 2fprA 176 7.64e+01 c.108.1.19 133919 1u6lA 149 7.65e+01 d.32.1.7 113067 2nsaA 170 7.69e+01 2oy9A 98 7.70e+01 1g8mA 593 7.72e+01 1g8mA c.24.1.3,c.97.1.4 60371,60372 1uwmA 106 7.75e+01 d.15.4.1 119763 1cmxA 236 7.77e+01 1uch d.3.1.6 37130 1v9cA 218 7.79e+01 c.23.17.1 100533 1fusA 106 7.84e+01 d.1.1.4 36050 2cc3A 150 7.97e+01