# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2igd 61 2.40e-16 2igd 2igdA 61 2.40e-16 d.15.7.1 37821 2qmtA 56 2.54e-16 2gi9A 56 2.90e-16 2on8A 56 3.05e-14 2b7eA 59 3.31e-01 1bs0A 384 1.66e+00 1bs0A c.67.1.4 34490 1orc 71 2.21e+00 1orc 1orcA 71 2.21e+00 a.35.1.2 17054 2dk5A 91 2.89e+00 1tit 98 4.38e+00 1tit 1ysjA 404 5.80e+00 c.56.5.4,d.58.19.1 123975,123976 2irfG 113 5.98e+00 2irfG a.4.5.23 16185 1waaA 93 6.35e+00 1ae9A 179 8.03e+00 1ae9A d.163.1.1 42153 3cjsA 60 8.34e+00 1lfwA 470 8.40e+00 c.56.5.4,d.58.19.1 77942,77943 1ydlA 79 9.84e+00 d.295.1.1 123001 3bcwA 123 1.06e+01 2go8A 122 1.09e+01 1uilA 113 1.45e+01 d.50.1.1 113255 1t6gC 184 1.47e+01 b.29.1.11 106569 1z1dA 103 1.57e+01 a.4.5.16 124351 2jt1A 77 1.63e+01 1dpuA 99 1.66e+01 1dpuA a.4.5.16 16150 2qsbA 89 1.67e+01 1t6aA 126 1.71e+01 d.129.8.1 106555 1uxtA 501 1.73e+01 c.82.1.1 108125 2gfsA 372 1.73e+01 d.144.1.7 135109 3fruA 269 1.76e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1zzlA 351 1.77e+01 d.144.1.7 125910 1b9lA 120 1.83e+01 1b9lA d.96.1.3 40665 1umdA 367 1.88e+01 c.36.1.11 99599 1sl4A 155 2.01e+01 d.169.1.1 105710 1jt6A 188 2.14e+01 a.4.1.9,a.121.1.1 67247,67248 1deeG 54 2.14e+01 1fc2C a.8.1.1 16343 2rgqA 144 2.22e+01 2ejqA 130 2.25e+01 1ufmA 84 2.27e+01 a.4.5.47 107816 2bs2B 241 2.30e+01 a.1.2.1,d.15.4.2 129033,129034 2oz4A 265 2.34e+01 1x3aA 100 2.35e+01 a.240.1.1 121659 1k3tA 359 2.38e+01 c.2.1.3,d.81.1.1 72022,72023 1xpaA 122 2.51e+01 a.6.1.2,g.39.1.5 16308,45151 2dqsA 995 2.68e+01 2qklA 127 2.71e+01 1ywrA 360 2.75e+01 1wbsA 360 2.85e+01 d.144.1.7 120860 2vm6A 150 3.00e+01 2iz3A 97 3.08e+01 1qvtA 194 3.14e+01 a.4.1.9,a.121.1.1 104602,104603 1hz6A 72 3.26e+01 2ptl d.15.7.1 61429 2joeA 139 3.33e+01 2p12A 176 3.36e+01 1dj8A 89 3.49e+01 1bg8A a.57.1.1 17919 3c6fA 153 3.55e+01 1uzcA 71 3.56e+01 a.159.2.1 100222 1osyA 115 3.56e+01 b.1.21.1 93502 1aocA 175 3.60e+01 1aocA g.17.1.5 44817 2aeuA 374 3.69e+01 c.67.1.8 126646 1ku1A 230 3.69e+01 a.118.3.1 72996 1p3hA 99 3.74e+01 b.35.1.1 87734 1e0fI 57 3.75e+01 1e0fI g.3.15.2 44377 1wpgA 994 3.78e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1bbyA 69 3.86e+01 a.4.5.15 16149 1l8dA 112 3.90e+01 h.4.12.1 73687 1y7tA 327 3.93e+01 c.2.1.5,d.162.1.1 122718,122719 3bf7A 255 4.01e+01 1uwdA 103 4.08e+01 d.52.8.2 113447 1bmdA 327 4.08e+01 1bmdA c.2.1.5,d.162.1.1 30139,42106 1bdmA 327 4.18e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 2hoqA 241 4.21e+01 2uykA 129 4.21e+01 2rg4A 216 4.25e+01 2cmxA 118 4.30e+01 2vqcA 118 4.30e+01 2ofcA 142 4.32e+01 1rwyA 109 4.61e+01 a.39.1.4 98002 1dp7P 76 4.67e+01 1dp7P a.4.5.20 16159 1jocA 125 4.68e+01 g.50.1.1,h.1.21.1 66990,66991 2ak4D 211 4.71e+01 2e29A 92 4.93e+01 1s4nA 348 4.94e+01 c.68.1.16 98501 1ujrA 110 4.98e+01 d.289.1.1 113258 1tp4A 97 5.02e+01 a.189.1.1 107183 1j2rA 199 5.22e+01 c.33.1.3 90788 1jsdB 176 5.33e+01 h.3.1.1 63259 1x2mA 64 5.40e+01 a.4.1.1 121645 1xvjA 109 5.43e+01 2ffwA 78 5.43e+01 1w7jB 151 5.49e+01 a.39.1.5 120690 1k9jA 139 5.58e+01 d.169.1.1 68353 1ci0A 228 5.59e+01 1ci0A b.45.1.1 25750 2vqeJ 105 5.60e+01 3b2mA 295 5.68e+01 2uubJ 105 5.77e+01 d.58.15.1 139941 1pvaA 110 5.80e+01 1a75A a.39.1.4 17207 1s9uA 207 6.08e+01 a.184.1.1 105390 1vdiA 52 6.22e+01 j.22.1.1 119992 1edzA 320 6.27e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 2inpE 118 6.40e+01 2nxcA 254 6.51e+01 c.66.1.39 138739 2doaA 104 6.63e+01 3bhgA 459 6.69e+01 1fjgJ 105 6.73e+01 1fjfJ d.58.15.1 39330 2a38A 194 6.75e+01 2j0pA 345 6.86e+01 e.62.1.1 137903 1ve1A 304 6.87e+01 c.79.1.1 120007 2dqlA 115 6.93e+01 1dpgA 485 7.02e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 2z0aA 79 7.29e+01 2pn6A 150 7.38e+01 1fseA 74 7.40e+01 1fseA a.4.6.2 60000 3c8wA 255 7.41e+01 1who 96 7.65e+01 1who 1whoA 96 7.65e+01 b.7.3.1 23215 2hz5A 106 7.66e+01 3c8lA 122 7.66e+01 2e7xA 150 7.70e+01 1h4gA 207 7.73e+01 b.29.1.11 70863 1gypA 358 7.73e+01 1dssG c.2.1.3,d.81.1.1 30004,39919 2tct 207 7.77e+01 2tct 2i15A 135 7.87e+01 1y0zA 330 7.93e+01 b.82.2.8 116317