# TARGET T0498 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0498.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.05862 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.004 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.004 0.005 0.002 0.002 0.001 0.001 0.001 0.336 0.054 0.096 0.462 2 T 0.005 0.036 0.002 0.001 0.001 0.001 0.001 0.001 0.012 0.007 0.010 0.002 0.006 0.004 0.003 0.004 0.385 0.105 0.064 0.353 3 Y 0.003 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.009 0.007 0.007 0.005 0.639 0.090 0.029 0.172 4 K 0.003 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.011 0.014 0.006 0.733 0.124 0.011 0.071 5 L 0.002 0.011 0.002 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.003 0.789 0.065 0.014 0.101 6 I 0.006 0.014 0.002 0.001 0.002 0.002 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.836 0.029 0.014 0.085 7 L 0.017 0.029 0.008 0.001 0.008 0.008 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.608 0.062 0.044 0.204 8 N 0.040 0.124 0.006 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.298 0.082 0.070 0.372 9 L 0.226 0.173 0.004 0.001 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.080 0.085 0.065 0.358 10 K 0.111 0.191 0.005 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.095 0.066 0.457 11 Q 0.094 0.235 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.049 0.051 0.516 12 A 0.109 0.357 0.005 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.025 0.075 0.048 0.364 13 K 0.121 0.582 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.080 0.026 0.170 14 E 0.083 0.585 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.091 0.032 0.189 15 E 0.041 0.518 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.086 0.050 0.254 16 A 0.065 0.483 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.092 0.053 0.239 17 I 0.117 0.544 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.082 0.042 0.165 18 K 0.086 0.483 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.093 0.056 0.236 19 E 0.053 0.472 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.099 0.055 0.269 20 L 0.017 0.424 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.073 0.101 0.332 21 V 0.006 0.053 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.735 0.035 0.134 22 D 0.011 0.815 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.142 0.006 0.018 23 A 0.017 0.945 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.007 0.024 24 G 0.002 0.939 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.028 0.003 0.025 25 T 0.001 0.979 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.002 0.007 26 A 0.005 0.960 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.001 0.005 27 E 0.004 0.969 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.001 0.005 28 K 0.003 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.002 0.015 29 Y 0.008 0.936 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.032 0.004 0.011 30 I 0.040 0.895 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.032 0.006 0.019 31 K 0.053 0.506 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.222 0.027 0.163 32 L 0.153 0.385 0.033 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.112 0.044 0.255 33 I 0.192 0.127 0.129 0.002 0.015 0.018 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.174 0.070 0.251 34 A 0.186 0.018 0.049 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.151 0.081 0.496 35 N 0.245 0.009 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.046 0.062 0.624 36 A 0.072 0.003 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.029 0.084 0.795 37 K 0.009 0.004 0.002 0.001 0.003 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.023 0.092 0.821 38 T 0.042 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.012 0.005 0.001 0.001 0.001 0.001 0.001 0.070 0.023 0.083 0.740 39 V 0.101 0.014 0.001 0.001 0.002 0.001 0.001 0.002 0.016 0.043 0.033 0.008 0.024 0.005 0.002 0.002 0.088 0.103 0.092 0.462 40 E 0.021 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.006 0.010 0.005 0.030 0.015 0.008 0.007 0.148 0.123 0.094 0.517 41 G 0.018 0.017 0.001 0.001 0.001 0.001 0.001 0.003 0.005 0.005 0.006 0.005 0.021 0.030 0.025 0.011 0.289 0.109 0.073 0.381 42 V 0.015 0.019 0.002 0.001 0.001 0.002 0.003 0.007 0.014 0.015 0.019 0.006 0.019 0.021 0.040 0.017 0.372 0.072 0.072 0.283 43 W 0.005 0.013 0.003 0.001 0.005 0.004 0.009 0.006 0.001 0.001 0.002 0.002 0.007 0.005 0.009 0.007 0.449 0.021 0.081 0.371 44 T 0.032 0.035 0.010 0.001 0.022 0.022 0.011 0.011 0.001 0.001 0.003 0.002 0.014 0.016 0.011 0.007 0.468 0.078 0.056 0.200 45 L 0.128 0.051 0.015 0.002 0.008 0.002 0.005 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.130 0.188 0.095 0.364 46 K 0.276 0.031 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.111 0.085 0.088 0.403 47 D 0.104 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.110 0.095 0.605 48 E 0.011 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.138 0.051 0.149 0.639 49 I 0.022 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.115 0.077 0.129 0.632 50 K 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.005 0.005 0.001 0.003 0.001 0.001 0.001 0.314 0.093 0.122 0.432 51 T 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.005 0.003 0.002 0.002 0.218 0.076 0.080 0.593 52 F 0.005 0.007 0.002 0.001 0.004 0.002 0.003 0.003 0.001 0.001 0.001 0.001 0.006 0.008 0.007 0.004 0.519 0.082 0.069 0.274 53 T 0.036 0.009 0.002 0.001 0.006 0.004 0.006 0.005 0.001 0.001 0.001 0.001 0.002 0.002 0.004 0.004 0.373 0.081 0.061 0.400 54 V 0.019 0.010 0.003 0.001 0.006 0.003 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.341 0.064 0.081 0.462 55 T 0.088 0.022 0.001 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.135 0.062 0.085 0.598 56 E 0.066 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.082 0.047 0.105 0.665