# TARGET T0498 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0498.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.05862 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.044 0.010 0.010 0.001 0.006 0.008 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.123 0.011 0.116 0.664 2 T 0.028 0.005 0.004 0.001 0.012 0.015 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.200 0.005 0.118 0.600 3 Y 0.018 0.005 0.003 0.001 0.021 0.027 0.018 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.491 0.004 0.078 0.328 4 K 0.011 0.003 0.002 0.001 0.005 0.005 0.012 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.710 0.002 0.072 0.169 5 L 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.839 0.001 0.040 0.105 6 I 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.003 0.001 0.910 0.001 0.012 0.057 7 L 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.001 0.918 0.001 0.013 0.053 8 N 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.003 0.002 0.001 0.001 0.001 0.001 0.002 0.622 0.004 0.047 0.296 9 L 0.008 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.602 0.006 0.053 0.309 10 K 0.019 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.127 0.008 0.333 0.500 11 Q 0.080 0.014 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.074 0.020 0.197 0.607 12 A 0.171 0.132 0.009 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.082 0.028 0.098 0.472 13 K 0.076 0.180 0.010 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.016 0.117 0.524 14 E 0.052 0.147 0.018 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.013 0.061 0.652 15 E 0.070 0.279 0.008 0.001 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.014 0.092 0.482 16 A 0.101 0.428 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.012 0.073 0.336 17 I 0.058 0.682 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.008 0.020 0.169 18 K 0.045 0.676 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.009 0.026 0.173 19 E 0.052 0.684 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.010 0.040 0.178 20 L 0.071 0.774 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.011 0.013 0.095 21 V 0.041 0.810 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.006 0.019 0.070 22 D 0.032 0.706 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.012 0.028 0.165 23 A 0.041 0.678 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.021 0.017 0.201 24 G 0.052 0.538 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.018 0.103 0.264 25 T 0.069 0.555 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.014 0.128 0.218 26 A 0.039 0.820 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.007 0.015 0.108 27 E 0.019 0.760 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.041 0.167 28 K 0.014 0.847 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.046 0.087 29 Y 0.009 0.965 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.021 30 I 0.005 0.981 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 31 K 0.004 0.977 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.014 32 L 0.005 0.981 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.010 33 I 0.014 0.971 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.006 34 A 0.026 0.934 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.011 0.002 0.015 35 N 0.061 0.785 0.011 0.001 0.001 0.001 0.001 0.001 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.062 0.004 0.056 36 A 0.204 0.495 0.013 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.164 0.004 0.108 37 K 0.279 0.140 0.054 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.189 0.030 0.286 38 T 0.108 0.005 0.594 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.039 0.056 0.171 39 V 0.058 0.009 0.061 0.044 0.004 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.253 0.006 0.076 0.481 40 E 0.021 0.008 0.003 0.008 0.046 0.016 0.020 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.283 0.003 0.241 0.347 41 G 0.024 0.005 0.006 0.001 0.008 0.017 0.005 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.229 0.005 0.079 0.614 42 V 0.043 0.005 0.005 0.001 0.001 0.001 0.005 0.006 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.002 0.548 0.004 0.147 0.224 43 W 0.021 0.007 0.007 0.002 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.001 0.686 0.002 0.077 0.182 44 T 0.028 0.024 0.002 0.001 0.004 0.002 0.002 0.002 0.004 0.003 0.002 0.001 0.003 0.002 0.004 0.003 0.579 0.005 0.072 0.254 45 L 0.011 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.631 0.004 0.053 0.269 46 K 0.022 0.019 0.004 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.244 0.007 0.268 0.421 47 D 0.048 0.011 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.008 0.191 0.684 48 E 0.225 0.054 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.014 0.209 0.431 49 I 0.243 0.131 0.014 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.218 0.014 0.101 0.266 50 K 0.154 0.143 0.005 0.001 0.004 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.347 0.014 0.098 0.222 51 T 0.108 0.083 0.011 0.001 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.220 0.022 0.051 0.493 52 F 0.114 0.049 0.019 0.004 0.002 0.003 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.535 0.019 0.033 0.206 53 T 0.027 0.018 0.007 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.004 0.407 0.008 0.115 0.395 54 V 0.009 0.009 0.016 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.003 0.002 0.003 0.481 0.003 0.044 0.421 55 T 0.007 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.007 0.003 0.010 0.010 0.010 0.003 0.532 0.004 0.154 0.246 56 E 0.018 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.137 0.003 0.088 0.736