# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	5.62e-12		
2gi9A	56	5.65e-12		
1mi0A	65	5.70e-12	d.15.7.1	79135
2on8A	56	5.74e-12		
1mhxA	65	6.07e-12	d.15.7.1	79134
2igd	61	6.34e-12		
1pgx	83	6.38e-12		
2igdA	61	7.27e-12	d.15.7.1	37821
2b7eA	59	4.655		
1nijA	318	19.01	c.37.1.10,d.237.1.1	85741,85742
2i7hA	189	21.02		
2qzgA	94	24.12		
2qsbA	89	25.87		
1b2iA	83	26.69	g.14.1.1	44640
2f15A	96	27.06		
3cjsA	60	28.80		
1bwwA	109	32.13	b.1.1.1	20518
3bm1A	183	35.34		
1co6A	107	35.82	a.3.1.1	15894
1eeuA	114	35.97	b.1.1.1	20546
1ql3A	99	38.84	a.3.1.1	15822
1xg0A	76	41.26	d.184.1.1	115273
1qfwM	108	41.82	b.1.1.1	20436
1eeqA	114	42.05	b.1.1.1	20544
1i71A	83	42.13	g.14.1.1	61864
1f5vA	240	44.25	d.90.1.1	40255
1h8gA	95	44.45	b.109.1.1	65735
1tr0A	108	49.29	d.58.4.4	107261
1krnA	88	50.01	g.14.1.1	44629
2jh1A	246	52.47		
1ay0A	680	53.77	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
2hz5A	106	58.29		
1z0nA	96	58.56		
1a7nL	107	62.06	b.1.1.1	19940
1uzcA	71	65.24	a.159.2.1	100222
1i8kA	107	65.51	b.1.1.1	71130
2hu9A	130	65.67		
1cd8	114	74.22		
1pmlA	86	75.84	g.14.1.1	44632
1a2yA	107	77.97	b.1.1.1	19926
1j1xL	107	78.81	b.1.1.1	77064
1g7jA	107	79.57	b.1.1.1	19932
1wgxA	73	80.46	a.4.1.3	114626
1iznB	277	80.78	e.43.1.2	83848
2joqA	91	82.29		
1wz4A	23	85.72		
2f6eA	127	87.07		
1vmiA	355	89.03	c.77.1.5	113678