# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	1.56e-13		
2igd	61	1.65e-13		
2on8A	56	1.70e-13		
1pgx	83	1.71e-13		
1mhxA	65	1.78e-13	d.15.7.1	79134
2gi9A	56	1.83e-13		
2igdA	61	1.90e-13	d.15.7.1	37821
1mi0A	65	2.13e-13	d.15.7.1	79135
2b7eA	59	1.098		
1ql3A	99	6.620	a.3.1.1	15822
2f15A	96	6.851		
3cjsA	60	7.082		
2i7hA	189	7.293		
1uzcA	71	11.58	a.159.2.1	100222
1f5vA	240	13.45	d.90.1.1	40255
3bm1A	183	15.29		
1b2iA	83	18.38	g.14.1.1	44640
1z0nA	96	18.77		
1xg0A	76	19.49	d.184.1.1	115273
1h8gA	95	19.50	b.109.1.1	65735
1nijA	318	22.09	c.37.1.10,d.237.1.1	85741,85742
1krnA	88	31.23	g.14.1.1	44629
1z0mA	96	31.39		
1bwwA	109	33.57	b.1.1.1	20518
1i71A	83	33.77	g.14.1.1	61864
1pmlA	86	33.85	g.14.1.1	44632
2f6eA	127	38.24		
1gvmA	136	39.33	b.109.1.1	70612
1tr0A	108	39.45	d.58.4.4	107261
1eeuA	114	39.87	b.1.1.1	20546
2qsbA	89	43.57		
2pbqA	178	45.34		
2cruA	118	45.60	a.5.6.1	130742
2jt1A	77	45.75		
2jh1A	246	46.09		
1bkjA	240	47.61	d.90.1.1	40243
2qzgA	94	47.69		
1ay0A	680	47.76	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
1eeqA	114	48.55	b.1.1.1	20544
1lm7A	248	49.22	d.211.2.1	74031
2iskA	230	50.97		
1a7nL	107	52.72	b.1.1.1	19940
1zchA	255	54.41	d.90.1.1	124908
2v05A	311	54.74		
1vmiA	355	55.57	c.77.1.5	113678
1co6A	107	55.89	a.3.1.1	15894
1lrzA	426	58.51	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1i8kA	107	63.06	b.1.1.1	71130
1qfwM	108	66.25	b.1.1.1	20436
2hz5A	106	67.04		
2ofsA	75	67.32		
2freA	200	68.29	d.90.1.1	133985
3cz6A	168	71.28		
1a2yA	107	71.48	b.1.1.1	19926
1noxA	205	73.17	d.90.1.1	40242
1j1xL	107	73.26	b.1.1.1	77064
1zgkA	308	76.82		
1bplB	294	80.24	b.71.1.1	27716
1g7jA	107	80.76	b.1.1.1	19932
1ki0A	253	84.14	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
2j8bA	79	84.61		
2o2cA	613	87.26