# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	3.41e-12		
2gi9A	56	3.63e-12		
2on8A	56	4.20e-12		
1mhxA	65	4.26e-12	d.15.7.1	79134
2igd	61	4.57e-12		
1pgx	83	4.67e-12		
1mi0A	65	4.70e-12	d.15.7.1	79135
2igdA	61	5.31e-12	d.15.7.1	37821
2b7eA	59	1.281		
2qsbA	89	15.60		
2id3A	225	18.09	a.4.1.9,a.121.1.1	137261,137262
2f15A	96	18.28		
2qzgA	94	18.76		
1eeuA	114	19.42	b.1.1.1	20546
1bwwA	109	20.01	b.1.1.1	20518
2i7hA	189	22.70		
3bm1A	183	23.44		
1qfwM	108	24.76	b.1.1.1	20436
1eeqA	114	26.06	b.1.1.1	20544
1i8kA	107	26.51	b.1.1.1	71130
1f5vA	240	27.29	d.90.1.1	40255
1h8gA	95	27.60	b.109.1.1	65735
1b2iA	83	30.79	g.14.1.1	44640
1j1xL	107	35.77	b.1.1.1	77064
1i71A	83	36.05	g.14.1.1	61864
1a7nL	107	36.44	b.1.1.1	19940
1xg0A	76	37.77	d.184.1.1	115273
2hz5A	106	38.14		
2jt1A	77	42.31		
1a2yA	107	42.67	b.1.1.1	19926
1mqkL	120	43.51	b.1.1.1	85054
2jh1A	246	45.03		
2f6eA	127	46.23		
1g7jA	107	46.61	b.1.1.1	19932
1krnA	88	52.98	g.14.1.1	44629
1uzcA	71	54.14	a.159.2.1	100222
1dlfL	113	57.53	b.1.1.1	20382
1vmiA	355	60.06	c.77.1.5	113678
1gvmA	136	60.66	b.109.1.1	70612
2cruA	118	63.75	a.5.6.1	130742
3cjsA	60	66.40		
2dk5A	91	66.43		
1z0nA	96	67.88		
1a14L	104	69.70	b.1.1.1	20060
2v05A	311	71.10		
2qklA	127	71.53		
1umpA	631	73.13	a.102.4.2,a.102.4.2	99619,99620
1bgcA	174	73.24	a.26.1.1	16822
1bkjA	240	75.27	d.90.1.1	40243
1pmlA	86	76.08	g.14.1.1	44632
1cd8	114	78.72		
1a6wL	109	80.36	b.1.1.1	20252
1ql3A	99	81.17	a.3.1.1	15822
1iznB	277	81.77	e.43.1.2	83848
1ay0A	680	83.13	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
1a7qL	106	83.28	b.1.1.1	19954
2pbqA	178	86.98		
1a7oL	106	87.55	b.1.1.1	19942
1ki0A	253	88.00	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495