# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	2.32e-11		
2gi9A	56	2.52e-11		
2igd	61	2.83e-11		
2on8A	56	2.87e-11		
1pgx	83	3.08e-11		
1mhxA	65	3.08e-11	d.15.7.1	79134
2igdA	61	3.29e-11	d.15.7.1	37821
1mi0A	65	3.46e-11	d.15.7.1	79135
2b7eA	59	1.579		
2qsbA	89	19.97		
1eeuA	114	20.69	b.1.1.1	20546
1bwwA	109	24.26	b.1.1.1	20518
2i7hA	189	25.44		
2f15A	96	25.94		
1eeqA	114	26.50	b.1.1.1	20544
2id3A	225	27.57	a.4.1.9,a.121.1.1	137261,137262
3bm1A	183	27.59		
1qfwM	108	29.62	b.1.1.1	20436
1i8kA	107	31.13	b.1.1.1	71130
1a7nL	107	31.90	b.1.1.1	19940
1f5vA	240	32.22	d.90.1.1	40255
1h8gA	95	36.35	b.109.1.1	65735
1b2iA	83	37.19	g.14.1.1	44640
2qzgA	94	37.93		
1uzcA	71	38.19	a.159.2.1	100222
3cjsA	60	41.68		
1a2yA	107	42.64	b.1.1.1	19926
1j1xL	107	43.89	b.1.1.1	77064
1g7jA	107	45.48	b.1.1.1	19932
1i71A	83	46.15	g.14.1.1	61864
1xg0A	76	46.18	d.184.1.1	115273
1mqkL	120	46.62	b.1.1.1	85054
2hz5A	106	47.49		
1dlfL	113	48.76	b.1.1.1	20382
1cd8	114	55.03		
2jh1A	246	57.39		
1bgcA	174	58.62	a.26.1.1	16822
1krnA	88	63.06	g.14.1.1	44629
2f6eA	127	63.14		
1nijA	318	65.81	c.37.1.10,d.237.1.1	85741,85742
2jt1A	77	67.52		
2cruA	118	68.02	a.5.6.1	130742
2dk5A	91	69.31		
2qklA	127	71.40		
1a7qL	106	73.19	b.1.1.1	19954
1gvmA	136	74.14	b.109.1.1	70612
1z0nA	96	78.41		
1a14L	104	79.87	b.1.1.1	20060
1a6wL	109	83.32	b.1.1.1	20252
1a7oL	106	83.91	b.1.1.1	19942
1pmlA	86	84.37	g.14.1.1	44632
1kcvL	214	85.38	b.1.1.1,b.1.1.2	72317,72318
2v05A	311	86.72		
1bkjA	240	89.58	d.90.1.1	40243