# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	2.29e-11		
2gi9A	56	2.32e-11		
2on8A	56	2.56e-11		
1mi0A	65	2.60e-11	d.15.7.1	79135
2igd	61	2.82e-11		
1pgx	83	2.97e-11		
1mhxA	65	3.04e-11	d.15.7.1	79134
2igdA	61	3.14e-11	d.15.7.1	37821
2b7eA	59	1.678		
1eeuA	114	16.35	b.1.1.1	20546
2qsbA	89	17.81		
2id3A	225	20.89	a.4.1.9,a.121.1.1	137261,137262
1bwwA	109	21.19	b.1.1.1	20518
2f15A	96	22.21		
1eeqA	114	23.43	b.1.1.1	20544
1i8kA	107	23.49	b.1.1.1	71130
3bm1A	183	26.37		
1f5vA	240	27.71	d.90.1.1	40255
1qfwM	108	28.79	b.1.1.1	20436
2i7hA	189	29.53		
2qzgA	94	29.71		
1a7nL	107	31.49	b.1.1.1	19940
1j1xL	107	31.93	b.1.1.1	77064
1h8gA	95	36.51	b.109.1.1	65735
1a2yA	107	37.64	b.1.1.1	19926
1b2iA	83	37.95	g.14.1.1	44640
1g7jA	107	39.49	b.1.1.1	19932
2hz5A	106	40.43		
1mqkL	120	40.59	b.1.1.1	85054
1xg0A	76	45.96	d.184.1.1	115273
1i71A	83	46.12	g.14.1.1	61864
1dlfL	113	48.91	b.1.1.1	20382
3cjsA	60	50.74		
2jh1A	246	55.33		
1uzcA	71	57.31	a.159.2.1	100222
1cd8	114	57.75		
2f6eA	127	57.79		
1vmiA	355	57.79	c.77.1.5	113678
2dk5A	91	58.37		
1nijA	318	66.13	c.37.1.10,d.237.1.1	85741,85742
1krnA	88	66.93	g.14.1.1	44629
2jt1A	77	67.48		
2cruA	118	67.53	a.5.6.1	130742
1a7qL	106	70.28	b.1.1.1	19954
2qklA	127	71.69		
1a7oL	106	73.27	b.1.1.1	19942
1tr0A	108	74.93	d.58.4.4	107261
1gvmA	136	75.25	b.109.1.1	70612
1a14L	104	76.59	b.1.1.1	20060
1ppjB	439	77.94	d.185.1.1,d.185.1.1	104254,104255
1bgcA	174	79.97	a.26.1.1	16822
1iznB	277	80.28	e.43.1.2	83848
1a6wL	109	83.82	b.1.1.1	20252
1uacL	107	84.18	b.1.1.1	99133
1kcvL	214	84.66	b.1.1.1,b.1.1.2	72317,72318
1z0nA	96	85.16		
1ql3A	99	85.32	a.3.1.1	15822
1wz4A	23	88.03		
2v05A	311	89.01