# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gi9A	56	5.72e-10		
2qmtA	56	5.74e-10		
2on8A	56	6.40e-10		
1mi0A	65	6.89e-10	d.15.7.1	79135
2igd	61	6.99e-10		
2igdA	61	7.03e-10	d.15.7.1	37821
1mhxA	65	7.14e-10	d.15.7.1	79134
1pgx	83	7.41e-10		
2b7eA	59	6.082		
2qzgA	94	9.671		
2qsbA	89	9.926		
1eeuA	114	10.68	b.1.1.1	20546
1i8kA	107	13.84	b.1.1.1	71130
1bwwA	109	14.34	b.1.1.1	20518
1eeqA	114	15.65	b.1.1.1	20544
1qfwM	108	16.62	b.1.1.1	20436
1mqkL	120	20.63	b.1.1.1	85054
1dlfL	113	23.59	b.1.1.1	20382
1a7nL	107	23.72	b.1.1.1	19940
1g7jA	107	23.81	b.1.1.1	19932
1a2yA	107	25.38	b.1.1.1	19926
2jt1A	77	28.30		
1j1xL	107	35.76	b.1.1.1	77064
1a7oL	106	36.21	b.1.1.1	19942
1a7qL	106	36.96	b.1.1.1	19954
1a7pL	107	37.20	b.1.1.1	19950
1fcqA	350	37.24	c.1.8.9	65006
1ql3A	99	38.16	a.3.1.1	15822
1a14L	104	40.34	b.1.1.1	20060
1co6A	107	43.56	a.3.1.1	15894
2ppwA	216	49.28		
1uzcA	71	53.10	a.159.2.1	100222
1ab5A	125	53.47	c.23.1.1	31056
1kcvL	214	54.97	b.1.1.1,b.1.1.2	72317,72318
1j05A	111	55.05	b.1.1.1	90735
1uacL	107	56.37	b.1.1.1	99133
2id3A	225	58.60	a.4.1.9,a.121.1.1	137261,137262
1a6wL	109	61.62	b.1.1.1	20252
2pbqA	178	63.10		
1b2iA	83	75.67	g.14.1.1	44640
1ab6A	125	77.04	c.23.1.1	31054
1ae9A	179	77.41	d.163.1.1	42153
2hz5A	106	79.77		
1b0wA	108	83.74	b.1.1.1	20532
1n0xL	215	83.75	b.1.1.1,b.1.1.2	91532,91533
1ncwL	219	84.05	b.1.1.1,b.1.1.2	85557,85558
1mexL	213	88.34	b.1.1.1,b.1.1.2	91259,91260
1l7iL	214	88.56	b.1.1.1,b.1.1.2	73658,73659