# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gi9A	56	1.14e-11		
2on8A	56	1.22e-11		
2qmtA	56	1.32e-11		
1pgx	83	1.42e-11		
2igd	61	1.49e-11		
1mhxA	65	1.59e-11	d.15.7.1	79134
1mi0A	65	1.60e-11	d.15.7.1	79135
2igdA	61	1.70e-11	d.15.7.1	37821
2b7eA	59	1.943		
2i7hA	189	16.24		
3bm1A	183	20.48		
2qsbA	89	22.25		
1nijA	318	24.58	c.37.1.10,d.237.1.1	85741,85742
1uzcA	71	26.29	a.159.2.1	100222
2qzgA	94	28.61		
1f5vA	240	34.32	d.90.1.1	40255
2jh1A	246	34.94		
1bwwA	109	35.07	b.1.1.1	20518
1eeuA	114	39.81	b.1.1.1	20546
2f15A	96	41.72		
1ql3A	99	47.38	a.3.1.1	15822
1eeqA	114	47.91	b.1.1.1	20544
1qfwM	108	49.71	b.1.1.1	20436
1tr0A	108	53.76	d.58.4.4	107261
2cruA	118	56.33	a.5.6.1	130742
1zchA	255	57.48	d.90.1.1	124908
1h8gA	95	58.86	b.109.1.1	65735
1a7nL	107	58.89	b.1.1.1	19940
3cjsA	60	59.39		
1amy	403	60.84		
1iznB	277	63.60	e.43.1.2	83848
1b2iA	83	66.00	g.14.1.1	44640
1i8kA	107	67.02	b.1.1.1	71130
1xg0A	76	70.00	d.184.1.1	115273
2qklA	127	70.32		
1ay0A	680	70.79	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
1ywqA	200	72.68	d.90.1.1	124162
1q6oA	216	72.82	c.1.2.3	95986
1j1xL	107	74.18	b.1.1.1	77064
1i71A	83	79.09	g.14.1.1	61864
1a2yA	107	79.63	b.1.1.1	19926
2cfuA	658	81.05		
2pbqA	178	84.22		
2hz5A	106	84.71		
1g7jA	107	84.74	b.1.1.1	19932
1kpsB	171	87.79	a.118.12.1	68787
2f6eA	127	87.89		
1mijA	152	87.93	a.4.1.1	79150
2qmjA	870	89.58