# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mi0A 65 1.79e-17 d.15.7.1 79135 2gi9A 56 8.13e-17 2on8A 56 9.34e-17 1pgx 83 9.70e-17 1mhxA 65 9.99e-17 d.15.7.1 79134 2qmtA 56 1.19e-16 2igd 61 1.23e-16 2igdA 61 1.44e-16 d.15.7.1 37821 2b7eA 59 0.7959 1cd8 114 1.840 1ohvA 472 2.251 c.67.1.4 93031 1nrwA 288 3.551 c.108.1.10 86128 1o6gA 710 4.721 b.69.7.1,c.69.1.4 81087,81088 1qi9A 556 5.020 a.111.1.2 19053 1u55A 188 5.028 d.278.1.1 107677 1ojjA 402 5.804 b.29.1.10 93130 2airB 153 9.516 d.58.2.1,g.41.7.1 126832,126833 2inuA 410 10.11 1t17A 148 11.99 d.129.3.6 112215 2freA 200 12.01 d.90.1.1 133985 3thiA 371 12.10 c.94.1.1 35792 2qazA 128 15.31 1zupA 315 15.83 c.55.3.11 125681 2cjjA 93 17.67 a.4.1.3 130540 2pbqA 178 18.54 1ec7A 446 18.59 c.1.11.2,d.54.1.1 29218,38862 1gw1A 376 19.39 c.1.8.3 76361 3cncA 220 19.51 1qciA 262 20.40 d.165.1.1 42201 1bgcA 174 20.94 a.26.1.1 16822 2pgeA 377 21.01 1a78A 134 21.43 b.29.1.3 24212 1xpmA 396 22.78 c.95.1.2,c.95.1.2 115759,115760 2hz5A 106 23.31 2qsbA 89 23.38 2i7hA 189 23.91 1ay0A 680 24.73 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 1kmoA 774 27.00 f.4.3.3 72753 2o09A 189 27.56 1qfhA 212 28.00 b.1.18.10,b.1.18.10 21893,21894 2jesA 503 28.41 1vg0A 650 28.63 c.3.1.3,d.16.1.6 108596,108597 2q87A 110 28.87 1lrzA 426 29.19 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1qqcA 773 30.04 c.55.3.5,e.8.1.1 33724,43013 1rzjG 321 30.73 d.172.1.1 98200 1otcA 495 31.11 b.40.4.3,b.40.4.3,b.40.4.3 25307,25308,25309 1v73A 342 32.51 2qzgA 94 33.55 3bm1A 183 34.40 1vqzA 341 34.75 d.224.1.3,d.104.1.3 120426,120427 1h7sA 365 35.18 d.14.1.3,d.122.1.2 65705,65706 2rmcA 182 35.56 b.62.1.1 27491 1sltA 134 37.04 b.29.1.3 24186 2akaB 299 37.42 c.37.1.8 126914 1d0cA 444 39.89 d.174.1.1 64769 1xzzA 246 40.18 2cfcA 250 41.54 1xviA 275 42.25 c.108.1.10 116088 2cn3A 737 43.01 1uypA 432 43.46 b.29.1.19,b.67.2.3 100176,100177 1exnA 290 45.17 a.60.7.1,c.120.1.2 18088,33358 1ed5A 444 45.43 d.174.1.1 42530 1ae6L 219 45.93 b.1.1.1,b.1.1.2 20210,21222 1bwwA 109 46.55 b.1.1.1 20518 1htyA 1015 47.21 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1py5A 326 47.68 d.144.1.7 104389 2iufA 688 48.01 3b7fA 394 48.13 1eeuA 114 49.27 b.1.1.1 20546 1nlbL 220 49.99 b.1.1.1,b.1.1.2 80623,80624 1d8vA 263 50.08 d.165.1.1 42193 2c4mA 796 50.16 1jkgB 250 51.50 d.17.4.2 66796 1oq1A 223 52.14 b.29.1.17 93408 1pieA 419 52.47 d.14.1.5,d.58.26.7 94706,94707 2a4hA 126 53.25 c.47.1.23 126155 1iybA 208 54.14 d.124.1.1 90720 2fokA 579 54.40 a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1ed8A 449 54.70 c.76.1.1 34988 2bm0A 691 54.92 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 3cpgA 282 55.38 2qizA 982 56.09 1itxA 419 57.24 c.1.8.5,d.26.3.1 71425,71426 1xg0A 76 57.70 d.184.1.1 115273 2nutA 769 58.17 1eeqA 114 59.35 b.1.1.1 20544 2qklA 127 60.21 1mhyB 395 60.51 a.25.1.2 16781 1q6oA 216 61.35 c.1.2.3 95986 1fo0B 112 61.96 b.1.1.1 20631 3cz8A 319 62.00 1ndoA 449 62.28 b.33.1.2,d.129.3.3 24444,41323 1c1lA 136 63.04 b.29.1.3 24219 1z3eA 132 64.12 c.47.1.12 124400 2b02A 119 66.07 1qqfA 277 66.07 a.102.4.4 18875 3c2uA 538 66.52 2nxbA 123 66.65 3co4A 312 66.68 1p22A 435 68.15 a.158.1.1,b.69.4.1 87715,87716 1po0A 751 68.37 f.4.3.3 94960 1j0aA 325 70.53 c.79.1.1 83871 2oo1A 113 72.40 1l1nA 183 72.77 b.47.1.4 73476 1amy 403 74.09 2a65A 519 74.38 2yziA 138 74.50 1a7nL 107 75.52 b.1.1.1 19940 1hkkA 364 75.93 c.1.8.5,d.26.3.1 90634,90635 1lopA 164 76.61 b.62.1.1 27510 1qs0A 407 79.48 c.36.1.11 31829 1y7oA 218 80.17 c.14.1.1 122701 1f5vA 240 80.63 d.90.1.1 40255 2dwwA 114 81.57 1ngzB 220 81.95 b.1.1.1,b.1.1.2 80502,80503 1iznB 277 84.56 e.43.1.2 83848 1mzeA 351 85.51 b.82.2.6 79694 1tq8A 163 85.91 c.26.2.4 107204 1kpsB 171 85.93 a.118.12.1 68787 1ee9A 320 87.02 c.2.1.7,c.58.1.2 30288,33936