# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gi9A	56	1.83e-11		
2qmtA	56	2.16e-11		
2on8A	56	2.23e-11		
1pgx	83	2.44e-11		
1mhxA	65	2.50e-11	d.15.7.1	79134
1mi0A	65	2.58e-11	d.15.7.1	79135
2igd	61	2.58e-11		
2igdA	61	2.91e-11	d.15.7.1	37821
2b7eA	59	1.883		
2i7hA	189	18.90		
2f15A	96	22.66		
1bwwA	109	23.74	b.1.1.1	20518
1eeuA	114	24.55	b.1.1.1	20546
1eeqA	114	28.90	b.1.1.1	20544
3bm1A	183	29.36		
1nijA	318	30.67	c.37.1.10,d.237.1.1	85741,85742
1uzcA	71	34.73	a.159.2.1	100222
2qsbA	89	36.01		
1a7nL	107	36.07	b.1.1.1	19940
1qfwM	108	36.87	b.1.1.1	20436
1i8kA	107	42.79	b.1.1.1	71130
1f5vA	240	43.64	d.90.1.1	40255
2qzgA	94	45.00		
1h8gA	95	45.03	b.109.1.1	65735
1ql3A	99	46.01	a.3.1.1	15822
1j1xL	107	46.09	b.1.1.1	77064
1a2yA	107	50.52	b.1.1.1	19926
2jh1A	246	51.55		
1b2iA	83	52.32	g.14.1.1	44640
1g7jA	107	52.59	b.1.1.1	19932
1z0nA	96	53.24		
1cd8	114	55.72		
1kpsB	171	56.49	a.118.12.1	68787
2id3A	225	60.95	a.4.1.9,a.121.1.1	137261,137262
1tr0A	108	63.28	d.58.4.4	107261
2f6eA	127	64.14		
1mqkL	120	64.88	b.1.1.1	85054
2qklA	127	65.59		
1xg0A	76	67.76	d.184.1.1	115273
3cjsA	60	67.77		
1i71A	83	68.74	g.14.1.1	61864
1dlfL	113	71.57	b.1.1.1	20382
1a7qL	106	76.68	b.1.1.1	19954
1amy	403	79.70		
1zchA	255	79.76	d.90.1.1	124908
2v05A	311	80.75		
1gvmA	136	84.59	b.109.1.1	70612
1iznB	277	88.68	e.43.1.2	83848
1ay0A	680	88.74	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100