# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gi9A	56	4.64e-11		
2on8A	56	4.79e-11		
1pgx	83	4.94e-11		
1mhxA	65	4.97e-11	d.15.7.1	79134
1mi0A	65	5.25e-11	d.15.7.1	79135
2qmtA	56	5.35e-11		
2igd	61	5.49e-11		
2igdA	61	6.00e-11	d.15.7.1	37821
2b7eA	59	2.251		
2f15A	96	12.89		
3cjsA	60	21.04		
2i7hA	189	21.06		
1uzcA	71	28.94	a.159.2.1	100222
1b2iA	83	30.13	g.14.1.1	44640
1f5vA	240	30.82	d.90.1.1	40255
1z0nA	96	31.53		
2qsbA	89	32.24		
2qzgA	94	32.44		
1bwwA	109	33.21	b.1.1.1	20518
1eeuA	114	33.48	b.1.1.1	20546
1ql3A	99	34.65	a.3.1.1	15822
3bm1A	183	35.30		
1h8gA	95	38.96	b.109.1.1	65735
1eeqA	114	40.06	b.1.1.1	20544
1qfwM	108	43.49	b.1.1.1	20436
1xg0A	76	44.66	d.184.1.1	115273
1krnA	88	48.91	g.14.1.1	44629
1pmlA	86	52.02	g.14.1.1	44632
1z0mA	96	53.63		
1nijA	318	53.84	c.37.1.10,d.237.1.1	85741,85742
2f6eA	127	57.39		
2hz5A	106	57.42		
1a7nL	107	61.01	b.1.1.1	19940
1i71A	83	64.79	g.14.1.1	61864
1a2yA	107	67.72	b.1.1.1	19926
2jh1A	246	70.71		
1co6A	107	72.06	a.3.1.1	15894
2v05A	311	73.25		
1i8kA	107	75.99	b.1.1.1	71130
1g7jA	107	77.76	b.1.1.1	19932
1j1xL	107	78.75	b.1.1.1	77064
1gvmA	136	81.01	b.109.1.1	70612
1tr0A	108	81.94	d.58.4.4	107261
1mqkL	120	85.84	b.1.1.1	85054
1dlfL	113	86.76	b.1.1.1	20382