# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	1.48e-11		
2gi9A	56	1.49e-11		
2qmtA	56	1.54e-11		
1pgx	83	1.56e-11		
2igd	61	1.63e-11		
1mi0A	65	1.67e-11	d.15.7.1	79135
2igdA	61	1.81e-11	d.15.7.1	37821
1mhxA	65	1.81e-11	d.15.7.1	79134
2b7eA	59	3.033		
2f15A	96	19.89		
1eeuA	114	20.50	b.1.1.1	20546
1bwwA	109	22.67	b.1.1.1	20518
1eeqA	114	23.47	b.1.1.1	20544
2qsbA	89	29.99		
1b2iA	83	30.18	g.14.1.1	44640
3cjsA	60	32.68		
1i8kA	107	32.69	b.1.1.1	71130
1i71A	83	35.04	g.14.1.1	61864
1h8gA	95	35.38	b.109.1.1	65735
2qzgA	94	35.39		
1ql3A	99	36.36	a.3.1.1	15822
1a7nL	107	36.86	b.1.1.1	19940
1qfwM	108	41.03	b.1.1.1	20436
1xg0A	76	41.20	d.184.1.1	115273
1mqkL	120	43.92	b.1.1.1	85054
1z0nA	96	46.20		
2i7hA	189	47.33		
1pmlA	86	48.00	g.14.1.1	44632
1a2yA	107	48.10	b.1.1.1	19926
1j1xL	107	48.14	b.1.1.1	77064
2hz5A	106	48.78		
1uzcA	71	49.35	a.159.2.1	100222
1krnA	88	50.71	g.14.1.1	44629
2f6eA	127	51.78		
1dlfL	113	52.60	b.1.1.1	20382
1g7jA	107	53.64	b.1.1.1	19932
1co6A	107	64.60	a.3.1.1	15894
1ki0A	253	69.26	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
1gvmA	136	70.40	b.109.1.1	70612
3bm1A	183	71.86		
1kpsB	171	73.88	a.118.12.1	68787
1z0mA	96	74.60		
1a7oL	106	74.73	b.1.1.1	19942
2jh1A	246	75.22		
1f5vA	240	76.14	d.90.1.1	40255
1nijA	318	78.95	c.37.1.10,d.237.1.1	85741,85742
2id3A	225	79.38	a.4.1.9,a.121.1.1	137261,137262
2v05A	311	79.52		
1tr0A	108	82.99	d.58.4.4	107261
1a7pL	107	84.19	b.1.1.1	19950
1wz4A	23	88.30		
1a7qL	106	89.00	b.1.1.1	19954