# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gi9A	56	9.60e-10		
2qmtA	56	1.03e-09		
1pgx	83	1.06e-09		
2on8A	56	1.17e-09		
2igd	61	1.22e-09		
1mhxA	65	1.36e-09	d.15.7.1	79134
2igdA	61	1.37e-09	d.15.7.1	37821
1mi0A	65	1.49e-09	d.15.7.1	79135
2b7eA	59	15.42		
1eeqA	114	20.59	b.1.1.1	20544
1eeuA	114	23.12	b.1.1.1	20546
2cwlA	302	29.21	a.25.1.3	130927
1ab5A	125	30.99	c.23.1.1	31056
2qsbA	89	31.28		
2qzgA	94	36.73		
2ppwA	216	46.78		
1z1dA	103	49.81	a.4.5.16	124351
1dlfL	113	51.39	b.1.1.1	20382
1bwwA	109	57.87	b.1.1.1	20518
1i8kA	107	58.80	b.1.1.1	71130
1qfwM	108	59.62	b.1.1.1	20436
1bgcA	174	61.16	a.26.1.1	16822
2jc5A	259	62.00		
1ab6A	125	62.06	c.23.1.1	31054
2jt1A	77	62.19		
2qklA	127	70.51		
1e6mA	128	71.01	c.23.1.1	31039
1s8nA	205	74.17	c.23.1.1	105374
1ppjB	439	75.81	d.185.1.1,d.185.1.1	104254,104255
1go5A	69	79.10	a.5.2.3	65410
1uzcA	71	82.95	a.159.2.1	100222
1j1xL	107	85.96	b.1.1.1	77064
3cjsA	60	86.52