# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qmtA 56 2.33e-11 1pgx 83 2.53e-11 2on8A 56 2.57e-11 2gi9A 56 2.64e-11 2igd 61 2.66e-11 2igdA 61 2.94e-11 d.15.7.1 37821 1mhxA 65 3.09e-11 d.15.7.1 79134 1mi0A 65 3.86e-11 d.15.7.1 79135 1eeuA 114 6.432 b.1.1.1 20546 1i8kA 107 7.457 b.1.1.1 71130 1bwwA 109 7.462 b.1.1.1 20518 1eeqA 114 8.111 b.1.1.1 20544 2b7eA 59 10.91 1dlfL 113 11.23 b.1.1.1 20382 1a2yA 107 12.24 b.1.1.1 19926 1a7nL 107 12.54 b.1.1.1 19940 1qfwM 108 12.93 b.1.1.1 20436 1g7jA 107 13.03 b.1.1.1 19932 1j1xL 107 14.80 b.1.1.1 77064 1a7qL 106 15.06 b.1.1.1 19954 1mqkL 120 16.20 b.1.1.1 85054 2qklA 127 20.09 1a7oL 106 22.09 b.1.1.1 19942 1a7pL 107 23.00 b.1.1.1 19950 2qzgA 94 24.28 1a14L 104 27.83 b.1.1.1 20060 2qsbA 89 30.91 1b0wA 108 37.13 b.1.1.1 20532 1uacL 107 37.44 b.1.1.1 99133 1j05A 111 41.92 b.1.1.1 90735 1mlbA 214 45.04 b.1.1.1,b.1.1.2 20050,21092 1kcvL 214 48.70 b.1.1.1,b.1.1.2 72317,72318 2jt1A 77 51.75 1a6wL 109 52.02 b.1.1.1 20252 1ap2A 113 54.09 b.1.1.1 20182 1ncwL 219 56.74 b.1.1.1,b.1.1.2 85557,85558 1cd8 114 58.75 1ql3A 99 63.11 a.3.1.1 15822 1kgcD 206 63.64 b.1.1.1,b.1.1.2 77384,77385 1n0xL 215 71.13 b.1.1.1,b.1.1.2 91532,91533 1l7iL 214 71.81 b.1.1.1,b.1.1.2 73658,73659 1rurL 217 73.02 b.1.1.1,b.1.1.2 97881,97882 1mexL 213 78.64 b.1.1.1,b.1.1.2 91259,91260 1b2iA 83 78.89 g.14.1.1 44640 1ngzA 213 79.03 b.1.1.1,b.1.1.2 80500,80501 2joqA 91 81.12 1dqqA 214 81.37 b.1.1.1,b.1.1.2 20420,21390 3cjsA 60 83.74 1mjuL 219 85.69 b.1.1.1,b.1.1.2 91304,91305 1q1uA 144 85.73 b.42.1.1 95608 2hz5A 106 88.14 1q72L 218 88.61 b.1.1.1,b.1.1.2 96016,96017