# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mi0A	65	9.44e-10	d.15.7.1	79135
2gi9A	56	1.08e-09		
2on8A	56	1.20e-09		
2qmtA	56	1.52e-09		
2igdA	61	1.85e-09	d.15.7.1	37821
2igd	61	2.00e-09		
1pgx	83	2.03e-09		
1mhxA	65	2.36e-09	d.15.7.1	79134
1ris	101	3.861		
1cqmA	101	4.532	d.58.14.1	39321
1louA	101	6.713	d.58.14.1	39323
2pa2A	151	11.68		
1fx3A	169	16.79	d.33.1.1	38524
2gqpA	236	20.06	d.122.1.1	135513
1vr7A	142	22.15	d.156.1.2	120443
1tluA	130	22.95	d.156.1.2	107139
1bxm	99	23.90		
2j5aA	110	27.77		
1j75A	67	29.59	a.4.5.19	62673
3bjoA	103	30.88		
1s7iA	124	37.78	d.58.4.9	105353
1zpvA	91	37.85	d.58.18.7	125475
1d0iA	156	40.22	c.23.13.1	31383
1lriA	98	41.83	a.134.1.1	74223
2ebeA	106	42.80		
2c8mA	262	43.87		
1gtzA	156	44.61	c.23.13.1	70539
1vbuA	328	44.78	c.1.8.3	119963
2aibA	98	45.29	a.134.1.1	126824
2jt1A	77	47.37		
2bgcA	238	47.37	a.4.5.4,b.82.3.3	128458,128459
1vmbA	140	47.51	d.58.14.1	113672
1lcyA	325	49.70	b.36.1.4,b.47.1.1	73834,73835
1r6oC	106	50.13	d.45.1.2	118738
2hxwA	237	53.76		
1vgyA	393	55.52	c.56.5.4,d.58.19.1	100620,100621
1epaA	164	56.09	b.60.1.1	27128
1jvwA	167	57.69	d.26.1.1	71907
2cztA	167	58.56		
1cs0A	1073	58.67	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18558,31487,31673,31674,41518,41519
1v9jA	113	59.66	d.52.6.1	100542
2cm4A	150	60.89		
2posA	94	62.62		
1oaiA	59	62.70	a.5.2.3	81255
1gm6A	175	62.91	b.60.1.1	70272
2i7hA	189	65.57		
1ufmA	84	66.36	a.4.5.47	107816
2axoA	270	66.42	c.47.1.19	127496
1pn0A	665	71.53	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
1qynA	153	72.50	d.33.1.1	96597
2dyjA	95	75.46		
1feuA	206	76.15	b.53.1.1	59801
1peaA	385	76.33	c.93.1.1	35662
2d56A	53	77.75		
2csoA	127	78.79	a.4.5.31	130778
1c0wA	225	79.17	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
2hlvA	160	84.92		
1sqeA	109	85.28	d.58.4.5	105908
1wj9A	211	86.36	d.58.53.1,d.58.53.1	114694,114695
3c6fA	153	87.93		
2btvA	901	88.18	e.28.1.1	43376
1k55A	246	88.19	e.3.1.1	68156