# TARGET T0498 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0498.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77508 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.009 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.008 0.010 0.002 0.002 0.001 0.001 0.001 0.399 0.053 0.133 0.344 2 T 0.005 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.011 0.018 0.004 0.010 0.004 0.003 0.002 0.291 0.107 0.103 0.412 3 Y 0.005 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.017 0.005 0.021 0.024 0.007 0.006 0.585 0.115 0.038 0.152 4 K 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.018 0.016 0.015 0.011 0.675 0.099 0.024 0.121 5 L 0.001 0.007 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.009 0.005 0.866 0.049 0.008 0.039 6 I 0.005 0.008 0.001 0.001 0.004 0.003 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.802 0.037 0.018 0.104 7 L 0.017 0.017 0.001 0.001 0.003 0.004 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.735 0.073 0.031 0.104 8 N 0.064 0.101 0.003 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.303 0.083 0.089 0.347 9 L 0.155 0.260 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.098 0.083 0.321 10 K 0.103 0.346 0.010 0.001 0.002 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.078 0.098 0.066 0.287 11 Q 0.116 0.371 0.008 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.048 0.056 0.346 12 A 0.130 0.474 0.013 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.049 0.041 0.258 13 K 0.129 0.618 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.042 0.026 0.156 14 E 0.066 0.625 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.022 0.034 0.028 0.213 15 E 0.031 0.593 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.044 0.034 0.032 0.253 16 A 0.062 0.618 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.044 0.028 0.187 17 I 0.129 0.627 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.034 0.024 0.146 18 K 0.059 0.347 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.074 0.060 0.052 0.397 19 E 0.050 0.449 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.147 0.069 0.036 0.237 20 L 0.079 0.315 0.014 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.095 0.085 0.068 0.336 21 V 0.016 0.060 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.117 0.528 0.053 0.219 22 D 0.047 0.503 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.299 0.024 0.103 23 A 0.026 0.818 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.032 0.020 0.089 24 G 0.012 0.774 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.048 0.019 0.128 25 T 0.014 0.937 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.003 0.020 26 A 0.007 0.972 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.002 0.008 27 E 0.004 0.967 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.002 0.009 28 K 0.013 0.935 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.003 0.023 29 Y 0.007 0.956 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.002 0.015 30 I 0.016 0.949 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.004 0.014 31 K 0.026 0.657 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.183 0.016 0.111 32 L 0.052 0.658 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.090 0.023 0.157 33 I 0.114 0.325 0.116 0.004 0.003 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.190 0.052 0.176 34 A 0.087 0.047 0.168 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.244 0.061 0.370 35 N 0.455 0.014 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.027 0.032 0.461 36 A 0.052 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.013 0.060 0.860 37 K 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.011 0.103 0.842 38 T 0.016 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.048 0.081 0.806 39 V 0.109 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.016 0.011 0.001 0.001 0.001 0.001 0.001 0.080 0.085 0.081 0.581 40 E 0.017 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.129 0.043 0.127 0.661 41 G 0.009 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.008 0.010 0.022 0.009 0.524 0.060 0.057 0.276 42 V 0.016 0.026 0.001 0.001 0.006 0.005 0.014 0.004 0.002 0.002 0.001 0.001 0.002 0.005 0.033 0.015 0.283 0.058 0.080 0.446 43 W 0.009 0.018 0.002 0.001 0.020 0.007 0.014 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.517 0.039 0.064 0.295 44 T 0.133 0.088 0.003 0.001 0.009 0.003 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.236 0.121 0.065 0.329 45 L 0.261 0.079 0.012 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.137 0.140 0.067 0.293 46 K 0.150 0.084 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.084 0.099 0.472 47 D 0.072 0.012 0.007 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.142 0.224 0.110 0.426 48 E 0.022 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.019 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.435 0.122 0.083 0.303 49 I 0.009 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.008 0.003 0.007 0.001 0.002 0.001 0.001 0.001 0.138 0.065 0.109 0.651 50 K 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.008 0.002 0.007 0.006 0.003 0.003 0.756 0.048 0.021 0.137 51 T 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.004 0.003 0.005 0.004 0.243 0.040 0.082 0.609 52 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.901 0.013 0.011 0.065 53 T 0.004 0.001 0.001 0.001 0.003 0.001 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.380 0.043 0.059 0.488 54 V 0.004 0.001 0.001 0.001 0.007 0.002 0.007 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.453 0.028 0.054 0.432 55 T 0.030 0.003 0.001 0.001 0.007 0.002 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.199 0.056 0.073 0.617 56 E 0.033 0.004 0.001 0.001 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.153 0.033 0.085 0.680