# TARGET T0498 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0498.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77508 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.049 0.004 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.130 0.014 0.119 0.676 2 T 0.038 0.002 0.003 0.001 0.007 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.195 0.007 0.100 0.638 3 Y 0.009 0.002 0.001 0.001 0.012 0.007 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.738 0.003 0.041 0.175 4 K 0.003 0.001 0.001 0.001 0.025 0.013 0.017 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.796 0.002 0.035 0.096 5 L 0.001 0.001 0.001 0.001 0.003 0.003 0.006 0.006 0.001 0.001 0.001 0.001 0.001 0.005 0.008 0.007 0.868 0.001 0.020 0.070 6 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.960 0.001 0.006 0.023 7 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.004 0.004 0.005 0.003 0.933 0.001 0.018 0.024 8 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.860 0.001 0.024 0.106 9 L 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.485 0.003 0.114 0.370 10 K 0.018 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.008 0.322 0.533 11 Q 0.032 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.008 0.168 0.716 12 A 0.120 0.033 0.006 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.147 0.017 0.108 0.562 13 K 0.048 0.095 0.004 0.001 0.004 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.080 0.007 0.210 0.544 14 E 0.068 0.101 0.004 0.001 0.004 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.015 0.131 0.633 15 E 0.067 0.349 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.013 0.094 0.438 16 A 0.084 0.528 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.013 0.051 0.276 17 I 0.025 0.759 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.005 0.021 0.122 18 K 0.023 0.805 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.005 0.011 0.098 19 E 0.032 0.841 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.012 0.008 0.086 20 L 0.106 0.786 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.019 0.004 0.056 21 V 0.059 0.744 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.013 0.018 0.082 22 D 0.055 0.480 0.054 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.031 0.056 0.295 23 A 0.085 0.414 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.081 0.019 0.031 0.358 24 G 0.010 0.209 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.004 0.213 0.556 25 T 0.036 0.085 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.648 0.209 26 A 0.017 0.884 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.082 27 E 0.010 0.880 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.088 28 K 0.010 0.899 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.017 0.068 29 Y 0.004 0.980 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 30 I 0.002 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 31 K 0.002 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 32 L 0.004 0.988 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.004 33 I 0.015 0.973 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.004 34 A 0.014 0.973 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.004 35 N 0.034 0.866 0.008 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.042 0.005 0.035 36 A 0.225 0.504 0.018 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.104 0.009 0.126 37 K 0.202 0.209 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.108 0.079 0.360 38 T 0.228 0.033 0.112 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.135 0.120 0.342 39 V 0.104 0.034 0.140 0.013 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.013 0.172 0.449 40 E 0.006 0.010 0.004 0.005 0.017 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.300 0.003 0.102 0.539 41 G 0.012 0.012 0.002 0.002 0.012 0.019 0.027 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.349 0.008 0.056 0.487 42 V 0.111 0.012 0.011 0.001 0.001 0.005 0.016 0.010 0.001 0.001 0.001 0.001 0.002 0.004 0.005 0.005 0.337 0.011 0.128 0.340 43 W 0.014 0.012 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.007 0.007 0.003 0.002 0.509 0.003 0.053 0.380 44 T 0.033 0.017 0.004 0.001 0.003 0.002 0.002 0.003 0.003 0.003 0.016 0.002 0.014 0.008 0.005 0.003 0.417 0.009 0.127 0.328 45 L 0.015 0.018 0.002 0.001 0.001 0.001 0.001 0.001 0.013 0.007 0.003 0.001 0.002 0.001 0.001 0.002 0.461 0.003 0.070 0.399 46 K 0.015 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.267 0.004 0.200 0.458 47 D 0.088 0.046 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.122 0.030 0.147 0.558 48 E 0.314 0.075 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.130 0.028 0.091 0.353 49 I 0.243 0.106 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.201 0.026 0.137 0.257 50 K 0.066 0.044 0.006 0.001 0.011 0.004 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.517 0.015 0.064 0.263 51 T 0.028 0.046 0.015 0.003 0.011 0.009 0.017 0.005 0.003 0.001 0.001 0.001 0.001 0.002 0.006 0.005 0.190 0.014 0.088 0.555 52 F 0.026 0.018 0.004 0.001 0.001 0.002 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.759 0.010 0.022 0.137 53 T 0.026 0.025 0.008 0.002 0.001 0.001 0.005 0.004 0.002 0.001 0.007 0.002 0.013 0.017 0.019 0.011 0.222 0.011 0.229 0.394 54 V 0.008 0.007 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.002 0.631 0.003 0.022 0.309 55 T 0.012 0.023 0.002 0.001 0.001 0.001 0.002 0.002 0.020 0.009 0.009 0.003 0.012 0.009 0.010 0.007 0.344 0.007 0.228 0.298 56 E 0.066 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.003 0.002 0.002 0.003 0.002 0.002 0.264 0.013 0.064 0.555