# List of top-scoring protein chains for T0498.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.37e-08	d.15.7.1	37821
2ighA	61	1.37e-08	d.15.7.1	37832
1p7eA	56	1.47e-08	d.15.7.1	94221
1pgxA	83	1.54e-08	d.15.7.1	37823
2nmqA	55	1.70e-08	d.15.7.1	138377
1pgbA	56	2.04e-08	d.15.7.1	37824
1fccC	56	2.12e-08	d.15.7.1	37829
2iggA	64	2.13e-08	d.15.7.1	37831
2qmtA	56	2.17e-08		
1uwxA	63	2.22e-08	d.15.7.1	119765
1qkzA	64	2.22e-08	d.15.7.1	37826
1ibxB	145	2.29e-08	d.15.2.1	62232
2rmmA	56	2.44e-08		
1pn5A	159	2.80e-08	a.77.1.5	94948
2j52A	56	2.92e-08		
2i38A	150	3.25e-08		
2i2yA	150	3.29e-08		
2plpA	54	4.09e-08	d.15.7.1	139740
1fd6A	57	4.13e-08	d.15.7.1	59769
1em7A	56	5.69e-08	d.15.7.1	70131
2cwbA	108	6.49e-08		
1fclA	56	1.01e-07	d.15.7.1	59768
1q10A	56	1.10e-07	d.15.7.1	95526
2onqA	56	1.82e-07		
1mvkA	56	2.01e-07	d.15.7.1	79501
1gb4A	57	2.13e-07	d.15.7.1	37833
1zxhA	56	2.19e-07		
2on8A	56	2.45e-07		
1mi0A	65	1.87e-06	d.15.7.1	79135
1mhxA	65	3.22e-06	d.15.7.1	79134
1le3A	16	2.934	k.29.1.1	73861
1zxgA	59	17.54		
2b7eA	59	44.99		
1uc6A	109	57.37	b.1.2.1	107766
2fs1A	56	64.16		
1qydA	313	69.89	c.2.1.2	96583
1olpA	370	79.87	a.124.1.1,b.12.1.3	93320,93321