# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	2.62e-12		
2on8A	56	2.71e-12		
2igdA	61	3.13e-12	d.15.7.1	37821
2qmtA	56	3.95e-12		
2gi9A	56	4.15e-12		
2b7eA	59	2.170		
1vf8A	377	5.948	c.1.8.5,d.26.3.1	120029,120030
2qklA	127	14.62		
1iktA	120	18.80	d.106.1.1	66188
1x2gA	337	22.29		
3cz6A	168	24.84		
1uwcA	261	24.96	c.69.1.17	100101
1fioA	196	27.79	a.47.2.1	17773
1vkwA	218	29.60	d.90.1.2	108695
3cjsA	60	29.64		
1hz6A	72	38.18	d.15.7.1	61429
2dk5A	91	39.77		
12asA	330	47.15	d.104.1.1	40783
1krnA	88	48.10	g.14.1.1	44629
2ifxA	114	52.09		
1ql3A	99	52.18	a.3.1.1	15822
1eeuA	114	56.13	b.1.1.1	20546
2v05A	311	62.41		
2f6eA	127	65.12		
1ptf	88	68.64		
1c44A	123	71.26	d.106.1.1	40795
5hpgA	84	76.86	g.14.1.1	44642
1ptfA	88	78.02	d.94.1.1	40549
1ic6A	279	80.29	c.41.1.1	62257
2h6fB	437	80.36	a.102.4.3	136186
1wb0A	445	84.66	c.1.8.5,d.26.3.1	120825,120826
2qzgA	94	86.39		
2bnuA	203	87.57		
1dw0A	112	88.10	a.3.1.1	15911
1i71A	83	89.80	g.14.1.1	61864