# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	8.43e-14		
2igdA	61	9.05e-14	d.15.7.1	37821
2on8A	56	9.76e-14		
2qmtA	56	1.17e-13		
2gi9A	56	1.76e-13		
2b7eA	59	0.9776		
1vf8A	377	1.888	c.1.8.5,d.26.3.1	120029,120030
3cjsA	60	3.927		
1ql3A	99	6.609	a.3.1.1	15822
3cz6A	168	8.872		
1uwcA	261	11.41	c.69.1.17	100101
1iktA	120	19.98	d.106.1.1	66188
1krnA	88	26.46	g.14.1.1	44629
1vkwA	218	30.79	d.90.1.2	108695
1wb0A	445	33.64	c.1.8.5,d.26.3.1	120825,120826
1x2gA	337	40.62		
2pwwA	127	42.68		
1fioA	196	42.84	a.47.2.1	17773
2ifxA	114	43.77		
2f6eA	127	43.99		
5hpgA	84	44.64	g.14.1.1	44642
2f68X	313	46.82		
2v05A	311	49.45		
1cnoA	87	52.63	a.3.1.1	15814
2jt1A	77	55.66		
1z0nA	96	56.40		
2qklA	127	56.59		
1dw0A	112	62.77	a.3.1.1	15911
1oohA	126	73.57	a.39.2.1	93383
1lm7A	248	74.94	d.211.2.1	74031
1nl1A	147	75.95	g.14.1.1,g.32.1.1	91949,91950
2dk5A	91	78.66		
1zpvA	91	78.76	d.58.18.7	125475
1i71A	83	82.97	g.14.1.1	61864
1cxcA	124	83.63	a.3.1.1	15890
1rkqA	282	84.23	c.108.1.10	97621
1in0A	163	85.20	d.58.49.1,d.58.49.1	83694,83695
2shpA	525	86.41	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534