# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	1.88e-11		
2qmtA	56	1.98e-11		
2on8A	56	2.24e-11		
2igdA	61	2.48e-11	d.15.7.1	37821
2gi9A	56	2.85e-11		
2b7eA	59	1.083		
1vf8A	377	9.789	c.1.8.5,d.26.3.1	120029,120030
2qklA	127	16.79		
2dk5A	91	18.53		
1uwcA	261	18.69	c.69.1.17	100101
3cjsA	60	30.56		
1fioA	196	33.77	a.47.2.1	17773
3cz6A	168	34.37		
1iktA	120	37.47	d.106.1.1	66188
1krnA	88	40.22	g.14.1.1	44629
1vkwA	218	44.36	d.90.1.2	108695
1ptf	88	46.18		
1ptfA	88	53.80	d.94.1.1	40549
5hpgA	84	56.42	g.14.1.1	44642
2hz5A	106	63.90		
1hz6A	72	67.14	d.15.7.1	61429
2cruA	118	72.08	a.5.6.1	130742
1y51A	88	74.37		
2qsbA	89	75.04		
2v05A	311	77.80		
1eeuA	114	80.63	b.1.1.1	20546
1i71A	83	80.86	g.14.1.1	61864
2jt1A	77	82.49		
2qzgA	94	83.07		
1wviA	257	83.12	c.108.1.14	114915
1pchA	88	83.93	d.94.1.1	40564
2f6eA	127	83.94		
2h6fB	437	85.04	a.102.4.3	136186
1pch	88	86.21