# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	5.07e-09		
2igdA	61	6.07e-09	d.15.7.1	37821
2qmtA	56	6.56e-09		
2on8A	56	6.67e-09		
2gi9A	56	7.18e-09		
2b7eA	59	2.002		
1fioA	196	20.50	a.47.2.1	17773
1vf8A	377	22.92	c.1.8.5,d.26.3.1	120029,120030
1eeuA	114	30.44	b.1.1.1	20546
2qzgA	94	34.70		
2h6fB	437	35.82	a.102.4.3	136186
2qsbA	89	39.50		
1ql3A	99	42.75	a.3.1.1	15822
1hstA	90	45.62	a.4.5.13	16140
1auiB	169	51.83	a.39.1.5	17325
2ct9A	208	57.21		
2prdA	174	62.77	b.40.5.1	25435
1x2gA	337	64.67		
1lp1A	58	64.96	a.8.1.1	84664
1pch	88	69.59		
1ptf	88	74.86		
1ptfA	88	75.50	d.94.1.1	40549
1cxcA	124	77.75	a.3.1.1	15890
2cosA	54	79.90	a.5.2.1	130683
1z3xA	238	80.19	a.118.1.22,a.261.1.1	124416,124417
1qx2A	76	81.71	a.39.1.1	104622
4ubpA	101	84.31	d.8.1.1	37352
1hwxA	501	84.47	c.2.1.7,c.58.1.1	30250,33898
1tn6B	437	84.76	a.102.4.3	112528
1vr7A	142	85.37	d.156.1.2	120443
2pjkA	178	85.40		
1tdzA	272	87.28	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1ejxA	100	88.31	d.8.1.1	83182
3bd3A	112	89.52