# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	6.66e-13		
2igd	61	6.97e-13		
2igdA	61	7.70e-13	d.15.7.1	37821
2gi9A	56	8.54e-13		
2qmtA	56	8.61e-13		
2b7eA	59	0.9618		
1vf8A	377	4.086	c.1.8.5,d.26.3.1	120029,120030
2qklA	127	15.67		
3cz6A	168	17.00		
1iktA	120	19.75	d.106.1.1	66188
1fioA	196	27.01	a.47.2.1	17773
2dk5A	91	27.45		
1uwcA	261	29.30	c.69.1.17	100101
2ifxA	114	35.92		
1x2gA	337	37.70		
1ql3A	99	47.89	a.3.1.1	15822
2h6fB	437	49.40	a.102.4.3	136186
1vkwA	218	49.80	d.90.1.2	108695
1ic6A	279	51.74	c.41.1.1	62257
3cjsA	60	52.31		
2hy5A	130	57.35	c.114.1.1	136865
2nq5A	755	57.74		
2v9cA	215	59.23		
2cjjA	93	60.20	a.4.1.3	130540
1ptf	88	61.26		
1p49A	562	68.80	c.76.1.2	94089
1ptfA	88	70.54	d.94.1.1	40549
1krnA	88	72.97	g.14.1.1	44629
2f6eA	127	79.10		
1y51A	88	80.34		
2v05A	311	80.42		
5hpgA	84	86.56	g.14.1.1	44642
2q00A	129	89.36