# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2on8A 56 1.23e-15 2igd 61 1.32e-15 2igdA 61 1.48e-15 d.15.7.1 37821 2qmtA 56 1.50e-15 2gi9A 56 1.59e-15 2b7eA 59 0.8386 2v7kA 361 1.469 2nq5A 755 2.841 1qi9A 556 2.891 a.111.1.2 19053 1gteA 1025 4.504 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1wviA 257 6.251 c.108.1.14 114915 2v1pA 467 7.437 2hpvA 208 7.642 2f68X 313 9.551 1r17A 343 9.812 b.2.3.4,b.2.3.4 96796,96797 1r9lA 309 10.15 c.94.1.1 97262 1ec7A 446 10.42 c.1.11.2,d.54.1.1 29218,38862 2pgeA 377 11.58 2qklA 127 11.70 1u55A 188 12.69 d.278.1.1 107677 2oegA 505 12.87 1nrwA 288 14.94 c.108.1.10 86128 1qqfA 277 16.44 a.102.4.4 18875 3cz6A 168 16.46 1ojjA 402 16.52 b.29.1.10 93130 2cmtA 172 17.76 1oq1A 223 18.32 b.29.1.17 93408 1t17A 148 19.47 d.129.3.6 112215 2o09A 189 21.59 2qeeA 437 22.42 1mppA 361 22.61 b.50.1.2 26856 3ctpA 330 23.17 1iktA 120 23.39 d.106.1.1 66188 1qh4A 380 23.88 a.83.1.1,d.128.1.2 18462,41197 2iw0A 254 24.54 c.6.2.3 137737 2cfcA 250 26.96 1sltA 134 27.20 b.29.1.3 24186 3cncA 220 27.28 1uv4A 293 27.49 b.67.2.1 119705 2cjjA 93 28.36 a.4.1.3 130540 2dk5A 91 28.91 1pv5A 264 30.35 d.251.1.1 95150 2c0hA 353 30.68 c.1.8.3 129594 2qazA 128 30.80 2z35A 112 31.44 1qgrA 876 31.80 a.118.1.1 19119 2gsoA 393 32.16 2inpC 328 32.64 1q7zA 566 33.03 c.1.21.2,c.1.26.1 96090,96091 1fioA 196 33.60 a.47.2.1 17773 1v93A 296 33.65 c.1.23.1 100532 2freA 200 33.73 d.90.1.1 133985 2rmcA 182 34.95 b.62.1.1 27491 2nutB 753 36.48 2nsfA 261 39.69 2d5lA 706 39.91 1azsC 388 40.58 a.66.1.1,c.37.1.8 18203,32086 1a78A 134 40.90 b.29.1.3 24212 2bnuA 203 43.13 2gwgA 350 43.78 c.1.9.15 135805 1b9hA 388 45.99 c.67.1.4 34488 2ob9A 130 46.63 1fs5A 266 46.64 c.124.1.1 65044 1ei6A 406 47.67 c.76.1.4 90443 3cmgA 667 48.62 1xviA 275 49.24 c.108.1.10 116088 2airB 153 49.70 d.58.2.1,g.41.7.1 126832,126833 2c4mA 796 50.02 2z8fA 412 50.20 2jhmF 218 50.43 2jg1A 330 50.58 2pzmA 330 51.01 1nl1A 147 51.84 g.14.1.1,g.32.1.1 91949,91950 2q00A 129 52.40 2cn3A 737 53.15 2fwhA 134 57.35 c.47.1.1 134242 2qwxA 231 57.60 2hz5A 106 59.38 2eh6A 375 60.06 2q4aA 330 60.18 b.82.2.8 139839 2calA 154 61.87 2j8gA 339 62.16 1gzcA 239 65.31 b.29.1.1 70803 1m7vA 363 66.01 d.174.1.1 78748 2j5aA 110 68.05 1h09A 338 68.78 b.109.1.1,c.1.8.8 83420,83421 1r89A 437 69.78 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 3cjsA 60 70.83 1kb5A 115 71.35 b.1.1.1 20611 1vlsA 146 72.52 a.24.2.1 16532 2iiiA 135 73.84 2nxbA 123 75.18 1x1iA 752 75.70 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2ozpA 345 76.59 2sli 679 78.01 2al6A 375 79.24 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 2q9kA 151 79.35 1idpA 172 79.59 d.17.4.1 83685 2z6wA 165 80.25 3cpgA 282 80.38 1uh5A 329 80.93 c.2.1.2 107840 1jc9A 269 80.98 d.171.1.1 66490 2i7pA 362 81.27 1jhnA 424 83.24 b.104.1.1,b.29.1.12 66722,70060 1vns 609 84.61 2o2yA 349 86.04 c.2.1.2 138894 1yp2A 451 86.90 b.81.1.4,c.68.1.6 123798,123799 2ifxA 114 87.78 2bm0A 691 88.98 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752