# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	3.57e-12		
2on8A	56	3.82e-12		
2igdA	61	4.27e-12	d.15.7.1	37821
2qmtA	56	4.99e-12		
2gi9A	56	5.53e-12		
2b7eA	59	1.398		
1vf8A	377	5.338	c.1.8.5,d.26.3.1	120029,120030
3cz6A	168	16.46		
1iktA	120	18.56	d.106.1.1	66188
1uwcA	261	23.66	c.69.1.17	100101
1krnA	88	27.05	g.14.1.1	44629
2dk5A	91	29.78		
3cjsA	60	31.92		
1fioA	196	35.29	a.47.2.1	17773
2f6eA	127	43.14		
2v05A	311	43.93		
1ql3A	99	45.98	a.3.1.1	15822
1eeuA	114	48.02	b.1.1.1	20546
1i71A	83	53.55	g.14.1.1	61864
1z0nA	96	56.18		
2hz5A	106	58.31		
5hpgA	84	58.63	g.14.1.1	44642
12asA	330	59.01	d.104.1.1	40783
2ifxA	114	59.29		
2z35A	112	71.13		
1hz6A	72	72.13	d.15.7.1	61429
2bnuA	203	83.52		
2qklA	127	83.70		
2q00A	129	87.38		
2f15A	96	87.85		
2dxcB	157	88.25		
1oohA	126	88.53	a.39.2.1	93383