# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	1.18e-12		
2on8A	56	1.41e-12		
2igdA	61	1.43e-12	d.15.7.1	37821
2qmtA	56	1.63e-12		
2gi9A	56	1.73e-12		
2b7eA	59	3.751		
2qklA	127	4.215		
1vf8A	377	13.70	c.1.8.5,d.26.3.1	120029,120030
2h6fB	437	15.78	a.102.4.3	136186
1x2gA	337	21.68		
1eeuA	114	22.87	b.1.1.1	20546
2z35A	112	31.48		
1wviA	257	38.97	c.108.1.14	114915
1ic6A	279	48.10	c.41.1.1	62257
1tn6B	437	54.65	a.102.4.3	112528
2bnuA	203	54.76		
3cz6A	168	55.39		
2qzgA	94	56.30		
1zb9A	143	63.47		
1z3xA	238	64.55	a.118.1.22,a.261.1.1	124416,124417
2qsbA	89	64.59		
3bs3A	76	71.35		
2v05A	311	71.71		
2bjoA	136	78.48		
2dxcB	157	83.67		
2hy5A	130	86.88	c.114.1.1	136865