# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gi9A 56 4.14e-08 2igd 61 4.84e-08 2on8A 56 5.93e-08 2qmtA 56 8.90e-08 2igdA 61 8.93e-08 d.15.7.1 37821 1ysjA 404 3.337 c.56.5.4,d.58.19.1 123975,123976 1mwqA 101 4.235 d.58.4.7 91481 1lfwA 470 7.008 c.56.5.4,d.58.19.1 77942,77943 1vmbA 140 7.158 d.58.14.1 113672 1s7iA 124 7.831 d.58.4.9 105353 1fit 147 9.707 1x2gA 337 9.819 1sqeA 109 11.16 d.58.4.5 105908 1cqmA 101 11.51 d.58.14.1 39321 1fitA 147 11.56 d.13.1.1 37499 2qt7A 91 13.47 1z2lA 423 16.72 c.56.5.4,d.58.19.1 124383,124384 2j5aA 110 16.78 2ozzA 231 19.88 2i9fA 69 22.00 2i82A 217 22.51 1wd6A 123 23.17 d.58.4.12 114525 2fu4A 83 24.46 2uubJ 105 26.20 d.58.15.1 139941 1lf7A 182 26.32 b.60.1.1 73878 1ufmA 84 26.81 a.4.5.47 107816 3c19A 186 27.36 1vr7A 142 30.03 d.156.1.2 120443 1pjvA 32 30.81 g.3.7.2 94792 1j75A 67 31.94 a.4.5.19 62673 1ekrA 161 32.20 d.58.21.1 39380 2hztA 107 32.71 1pn0A 665 34.81 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1lriA 98 35.28 a.134.1.1 74223 2pwyA 258 36.24 2co5A 99 36.39 1brwA 433 36.74 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1e5pA 151 37.87 b.60.1.1 59272 1zpvA 91 39.23 d.58.18.7 125475 2bf5A 98 40.12 d.137.1.1 128405 2joeA 139 40.62 2aibA 98 41.72 a.134.1.1 126824 1gm6A 175 43.42 b.60.1.1 70272 2cztA 167 43.54 1q5yA 85 45.27 d.58.18.4 95950 1x89A 178 45.86 b.60.1.1 121799 1a3yA 149 46.58 b.60.1.1 27110 2hiqA 113 47.05 d.58.4.12 136529 2fswA 107 47.21 a.4.5.69 134042 1dzkA 157 47.34 b.60.1.1 27096 2cg4A 152 48.85 a.4.5.32,d.58.4.2 130417,130418 1koeA 172 49.00 d.169.1.5 42448 1b24A 188 49.25 d.95.2.1,d.95.2.1 40573,40574 2yydA 345 49.53 2hlvA 160 52.28 2hgcA 102 54.70 1tw3A 360 56.53 a.4.5.29,c.66.1.12 107373,107374 1rh6A 55 57.59 a.6.1.7 104935 2pw4A 188 57.86 1vgyA 393 58.18 c.56.5.4,d.58.19.1 100620,100621 2rhsA 294 59.58 3bwgA 239 60.37 2p5vA 162 60.84 1koe 172 62.08 2dtrA 226 62.45 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fvkA 189 62.53 c.47.1.13 90351 1ulyA 192 63.16 a.4.5.58 113297 2afwA 329 63.63 c.56.5.8 126707 1twyA 290 64.07 c.94.1.1 112767 2ebeA 106 65.89 2qyvA 487 66.61 1kpf 126 67.27 3cedA 98 67.59 2ovkC 159 67.85 1ucrA 78 67.85 a.4.5.45 99188 3d1cA 369 68.45 3pmgA 561 68.95 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1mzuA 129 69.76 d.110.3.1 79714 1p99A 295 70.08 c.94.1.1 94384 2fygA 128 70.24 g.86.1.1 134369 1r6oC 106 70.75 d.45.1.2 118738 1xd7A 145 71.13 a.4.5.55 109566 1zybA 232 71.87 a.4.5.4,b.82.3.2 125815,125816 2obeA 932 72.20 2raqA 97 72.24 2d56A 53 73.63 1epaA 164 73.84 b.60.1.1 27128 1qy1A 174 77.21 b.60.1.1 96568 3cuoA 99 79.24 3bjoA 103 79.58 1vknA 351 81.62 c.2.1.3,d.81.1.1 108676,108677 1pcaA 95 81.64 d.58.3.1 39063 2iihA 157 84.31 1oaiA 59 84.41 a.5.2.3 81255 1i4uA 181 84.91 b.60.1.1 61732 2zfhA 179 86.15 2ra6A 166 86.54 2dx0A 138 87.08 1x8dA 104 89.43