# TARGET T0498 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0498.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77508 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.149 0.089 0.216 0.341 0.004 0.112 0.006 0.007 0.010 0.003 0.013 0.016 0.022 0.001 0.003 0.008 2 T 0.014 0.262 0.158 0.542 0.001 0.008 0.001 0.002 0.004 0.001 0.002 0.002 0.002 0.001 0.001 0.003 3 Y 0.005 0.011 0.047 0.929 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 4 K 0.001 0.004 0.143 0.850 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 L 0.001 0.001 0.005 0.984 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 I 0.001 0.008 0.007 0.905 0.070 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 L 0.001 0.003 0.001 0.395 0.571 0.014 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 N 0.001 0.024 0.004 0.220 0.052 0.309 0.001 0.336 0.010 0.015 0.018 0.004 0.001 0.001 0.003 0.001 9 L 0.010 0.021 0.002 0.063 0.022 0.161 0.003 0.022 0.125 0.152 0.361 0.045 0.009 0.001 0.001 0.003 10 K 0.092 0.163 0.013 0.054 0.006 0.032 0.001 0.025 0.009 0.006 0.203 0.359 0.025 0.001 0.007 0.003 11 Q 0.019 0.072 0.114 0.084 0.011 0.106 0.010 0.005 0.029 0.011 0.059 0.260 0.143 0.005 0.006 0.067 12 A 0.031 0.030 0.178 0.052 0.012 0.061 0.056 0.007 0.002 0.002 0.076 0.090 0.356 0.019 0.012 0.017 13 K 0.006 0.058 0.062 0.042 0.001 0.071 0.011 0.021 0.004 0.002 0.111 0.108 0.453 0.002 0.032 0.017 14 E 0.011 0.014 0.031 0.084 0.001 0.023 0.008 0.002 0.016 0.003 0.139 0.079 0.544 0.005 0.004 0.038 15 E 0.035 0.021 0.123 0.089 0.001 0.017 0.005 0.002 0.001 0.001 0.029 0.184 0.475 0.003 0.007 0.009 16 A 0.002 0.008 0.038 0.052 0.001 0.071 0.006 0.001 0.001 0.001 0.023 0.048 0.733 0.002 0.003 0.012 17 I 0.002 0.007 0.013 0.036 0.002 0.069 0.007 0.001 0.001 0.001 0.036 0.021 0.793 0.007 0.002 0.004 18 K 0.002 0.063 0.014 0.052 0.001 0.007 0.004 0.003 0.001 0.001 0.020 0.050 0.760 0.005 0.011 0.008 19 E 0.002 0.004 0.019 0.060 0.001 0.012 0.004 0.001 0.003 0.001 0.007 0.027 0.797 0.005 0.005 0.053 20 L 0.007 0.006 0.067 0.020 0.001 0.019 0.010 0.001 0.001 0.001 0.009 0.009 0.804 0.005 0.007 0.036 21 V 0.008 0.077 0.104 0.132 0.002 0.023 0.011 0.008 0.001 0.002 0.010 0.020 0.548 0.007 0.013 0.035 22 D 0.006 0.008 0.009 0.011 0.007 0.369 0.024 0.001 0.001 0.003 0.029 0.022 0.472 0.024 0.003 0.011 23 A 0.004 0.008 0.007 0.009 0.001 0.012 0.001 0.007 0.001 0.001 0.590 0.036 0.309 0.001 0.013 0.004 24 G 0.001 0.009 0.005 0.007 0.001 0.006 0.003 0.001 0.001 0.004 0.027 0.625 0.299 0.002 0.002 0.007 25 T 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.011 0.015 0.966 0.001 0.001 0.001 26 A 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.037 0.029 0.930 0.001 0.001 0.001 27 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.056 0.940 0.001 0.001 0.001 28 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 29 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 30 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 31 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 32 L 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.989 0.002 0.001 0.003 33 I 0.001 0.001 0.007 0.004 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.958 0.007 0.005 0.012 34 A 0.001 0.004 0.018 0.019 0.001 0.007 0.019 0.001 0.001 0.001 0.006 0.003 0.859 0.016 0.022 0.024 35 N 0.005 0.011 0.012 0.006 0.028 0.045 0.099 0.005 0.002 0.001 0.009 0.005 0.381 0.343 0.009 0.040 36 A 0.010 0.012 0.012 0.007 0.008 0.008 0.021 0.073 0.002 0.001 0.106 0.009 0.169 0.233 0.313 0.014 37 K 0.009 0.092 0.051 0.012 0.001 0.005 0.008 0.018 0.050 0.008 0.012 0.071 0.045 0.007 0.260 0.351 38 T 0.105 0.012 0.190 0.013 0.002 0.001 0.010 0.001 0.011 0.001 0.001 0.001 0.005 0.002 0.003 0.644 39 V 0.178 0.003 0.508 0.015 0.026 0.166 0.064 0.004 0.001 0.002 0.002 0.002 0.007 0.015 0.004 0.004 40 E 0.002 0.715 0.122 0.094 0.001 0.014 0.001 0.036 0.002 0.001 0.003 0.001 0.002 0.001 0.003 0.002 41 G 0.016 0.008 0.005 0.881 0.001 0.022 0.001 0.001 0.034 0.007 0.016 0.004 0.002 0.001 0.001 0.003 42 V 0.039 0.017 0.630 0.293 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.001 0.001 0.001 43 W 0.001 0.004 0.028 0.941 0.003 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 T 0.002 0.033 0.026 0.712 0.032 0.175 0.001 0.003 0.001 0.001 0.005 0.004 0.005 0.001 0.001 0.001 45 L 0.002 0.027 0.007 0.302 0.039 0.435 0.002 0.028 0.002 0.002 0.130 0.009 0.013 0.001 0.001 0.001 46 K 0.003 0.240 0.013 0.135 0.008 0.107 0.003 0.032 0.010 0.004 0.191 0.215 0.032 0.001 0.005 0.002 47 D 0.013 0.072 0.031 0.118 0.005 0.100 0.008 0.007 0.019 0.004 0.155 0.225 0.210 0.003 0.011 0.020 48 E 0.040 0.060 0.142 0.068 0.005 0.033 0.021 0.004 0.006 0.001 0.088 0.130 0.323 0.016 0.014 0.051 49 I 0.015 0.092 0.241 0.101 0.002 0.057 0.024 0.007 0.004 0.001 0.011 0.074 0.293 0.010 0.032 0.037 50 K 0.016 0.081 0.204 0.240 0.005 0.039 0.028 0.006 0.009 0.002 0.015 0.008 0.228 0.016 0.014 0.088 51 T 0.057 0.093 0.230 0.454 0.003 0.028 0.009 0.006 0.009 0.001 0.008 0.006 0.041 0.007 0.009 0.039 52 F 0.020 0.027 0.360 0.550 0.001 0.007 0.001 0.002 0.002 0.001 0.002 0.003 0.011 0.001 0.002 0.010 53 T 0.012 0.017 0.132 0.756 0.006 0.055 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.008 54 V 0.007 0.025 0.052 0.795 0.033 0.057 0.002 0.004 0.001 0.001 0.014 0.002 0.007 0.001 0.001 0.001 55 T 0.002 0.110 0.019 0.324 0.192 0.274 0.009 0.027 0.002 0.003 0.009 0.018 0.006 0.004 0.001 0.001 56 E 0.004 0.067 0.026 0.362 0.037 0.104 0.007 0.129 0.010 0.004 0.200 0.013 0.017 0.002 0.012 0.005