# TARGET T0498 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0498.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77508 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.024 0.489 0.230 0.032 0.176 0.020 0.011 0.002 0.015 0.001 0.001 2 T 0.024 0.670 0.146 0.026 0.093 0.014 0.007 0.001 0.018 0.001 0.001 3 Y 0.003 0.706 0.120 0.006 0.141 0.010 0.002 0.001 0.011 0.001 0.001 4 K 0.005 0.840 0.067 0.001 0.063 0.012 0.001 0.001 0.010 0.001 0.001 5 L 0.003 0.779 0.156 0.001 0.018 0.032 0.001 0.001 0.011 0.001 0.001 6 I 0.016 0.811 0.083 0.002 0.014 0.060 0.002 0.001 0.011 0.001 0.001 7 L 0.017 0.662 0.192 0.011 0.066 0.027 0.002 0.001 0.023 0.001 0.001 8 N 0.046 0.249 0.286 0.079 0.081 0.161 0.036 0.005 0.043 0.010 0.004 9 L 0.173 0.184 0.229 0.091 0.131 0.050 0.052 0.024 0.036 0.028 0.003 10 K 0.553 0.121 0.175 0.087 0.020 0.014 0.015 0.002 0.007 0.004 0.002 11 Q 0.412 0.169 0.165 0.138 0.043 0.023 0.027 0.004 0.014 0.002 0.001 12 A 0.509 0.125 0.186 0.094 0.028 0.025 0.011 0.002 0.017 0.002 0.001 13 K 0.699 0.067 0.116 0.073 0.012 0.013 0.009 0.002 0.006 0.002 0.001 14 E 0.808 0.036 0.068 0.049 0.008 0.011 0.011 0.003 0.003 0.001 0.001 15 E 0.858 0.037 0.046 0.041 0.004 0.005 0.007 0.001 0.002 0.001 0.001 16 A 0.790 0.047 0.078 0.044 0.011 0.020 0.003 0.001 0.006 0.001 0.001 17 I 0.909 0.018 0.027 0.036 0.002 0.005 0.001 0.001 0.002 0.001 0.001 18 K 0.966 0.014 0.011 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 19 E 0.945 0.019 0.008 0.019 0.005 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.871 0.021 0.035 0.055 0.006 0.007 0.003 0.001 0.002 0.001 0.001 21 V 0.799 0.106 0.031 0.035 0.003 0.010 0.005 0.001 0.010 0.001 0.001 22 D 0.476 0.068 0.241 0.049 0.034 0.081 0.020 0.002 0.022 0.007 0.001 23 A 0.925 0.002 0.013 0.053 0.002 0.002 0.001 0.001 0.001 0.001 0.001 24 G 0.973 0.004 0.006 0.011 0.001 0.001 0.002 0.001 0.001 0.001 0.001 25 T 0.943 0.010 0.006 0.032 0.002 0.004 0.002 0.001 0.002 0.001 0.001 26 A 0.988 0.001 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 E 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 K 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 Y 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 I 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 K 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.985 0.002 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 I 0.935 0.007 0.011 0.041 0.001 0.002 0.001 0.001 0.002 0.001 0.001 34 A 0.864 0.015 0.025 0.077 0.003 0.005 0.005 0.001 0.005 0.001 0.001 35 N 0.500 0.017 0.039 0.348 0.015 0.015 0.047 0.006 0.007 0.004 0.001 36 A 0.730 0.026 0.051 0.149 0.005 0.005 0.019 0.006 0.005 0.002 0.001 37 K 0.257 0.025 0.042 0.492 0.008 0.009 0.153 0.008 0.005 0.001 0.001 38 T 0.036 0.054 0.077 0.090 0.036 0.017 0.610 0.069 0.007 0.004 0.001 39 V 0.017 0.360 0.544 0.016 0.008 0.044 0.001 0.001 0.008 0.001 0.001 40 E 0.082 0.285 0.329 0.249 0.006 0.030 0.009 0.001 0.010 0.001 0.001 41 G 0.013 0.105 0.058 0.015 0.638 0.024 0.020 0.084 0.005 0.038 0.001 42 V 0.022 0.784 0.094 0.005 0.068 0.016 0.002 0.001 0.008 0.001 0.001 43 W 0.009 0.571 0.250 0.009 0.112 0.029 0.001 0.001 0.018 0.001 0.001 44 T 0.020 0.646 0.131 0.018 0.090 0.048 0.002 0.001 0.044 0.001 0.001 45 L 0.109 0.481 0.230 0.032 0.069 0.039 0.005 0.001 0.032 0.002 0.001 46 K 0.523 0.146 0.143 0.121 0.013 0.020 0.019 0.001 0.010 0.001 0.002 47 D 0.360 0.098 0.084 0.157 0.079 0.013 0.153 0.028 0.020 0.007 0.001 48 E 0.438 0.134 0.212 0.134 0.016 0.022 0.030 0.003 0.009 0.001 0.001 49 I 0.144 0.259 0.212 0.317 0.016 0.023 0.018 0.001 0.010 0.001 0.001 50 K 0.188 0.366 0.189 0.080 0.089 0.027 0.036 0.004 0.018 0.002 0.001 51 T 0.024 0.591 0.191 0.058 0.089 0.023 0.008 0.001 0.015 0.001 0.001 52 F 0.016 0.626 0.146 0.015 0.157 0.025 0.003 0.001 0.011 0.001 0.001 53 T 0.010 0.681 0.186 0.007 0.042 0.045 0.003 0.001 0.025 0.001 0.001 54 V 0.037 0.702 0.154 0.007 0.016 0.067 0.004 0.001 0.013 0.001 0.001 55 T 0.105 0.530 0.177 0.050 0.062 0.047 0.007 0.001 0.021 0.001 0.001 56 E 0.112 0.457 0.209 0.042 0.084 0.032 0.021 0.001 0.039 0.002 0.001