# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	9.86e-12		
2igdA	61	1.14e-11	d.15.7.1	37821
2qmtA	56	1.35e-11		
2igd	61	1.42e-11		
2gi9A	56	1.51e-11		
2b7eA	59	3.064		
1cvrA	435	4.511	b.1.18.12,c.17.1.2	21949,31006
2qklA	127	21.18		
1vf8A	377	26.03	c.1.8.5,d.26.3.1	120029,120030
1x2gA	337	35.15		
3cjsA	60	39.66		
1sc3A	178	43.24	c.17.1.1	105416
1e9lA	377	43.43	c.1.8.5,d.26.3.1	59395,59396
2i7hA	189	49.22		
1ql3A	99	51.24	a.3.1.1	15822
2f15A	96	52.14		
2ifxA	114	54.09		
1hz6A	72	54.98	d.15.7.1	61429
2ek8A	421	55.08		
1y4oA	104	56.71		
1z0mA	96	59.57		
1z0nA	96	63.57		
1fioA	196	68.70	a.47.2.1	17773
1qx2A	76	70.74	a.39.1.1	104622
2cruA	118	72.34	a.5.6.1	130742
1v2yA	105	73.22	d.15.1.1	100275
1i71A	83	74.02	g.14.1.1	61864
1r1hA	696	74.32	d.92.1.4	104756
2f6eA	127	77.81		
1krnA	88	79.39	g.14.1.1	44629
2a1xA	308	83.90	b.82.2.9	126022
2e5aA	347	84.10		
2i5nM	323	85.39	f.26.1.1	137067
1pchA	88	88.01	d.94.1.1	40564
2qsbA	89	88.61