# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	4.82e-15		
2igdA	61	5.00e-15	d.15.7.1	37821
2qmtA	56	5.63e-15		
2igd	61	6.57e-15		
2gi9A	56	8.30e-15		
2b7eA	59	0.6434		
1cvrA	435	2.656	b.1.18.12,c.17.1.2	21949,31006
3cjsA	60	3.534		
1v2yA	105	5.397	d.15.1.1	100275
1vf8A	377	5.881	c.1.8.5,d.26.3.1	120029,120030
1e9lA	377	8.423	c.1.8.5,d.26.3.1	59395,59396
1ql3A	99	10.59	a.3.1.1	15822
1d3cA	686	12.31	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1krnA	88	20.19	g.14.1.1	44629
2i7hA	189	20.76		
1y4oA	104	20.85		
1qn2A	100	22.37	a.3.1.1	15882
2f15A	96	23.85		
1z0mA	96	24.87		
1z0nA	96	27.22		
2pi6A	361	31.15		
1x2gA	337	32.14		
2vpjA	301	32.32		
1i71A	83	32.34	g.14.1.1	61864
2hekA	371	32.46	a.211.1.1	136354
2f68X	313	33.29		
1r1hA	696	34.95	d.92.1.4	104756
2uvkA	357	37.37		
1hkkA	364	40.31	c.1.8.5,d.26.3.1	90634,90635
1nl1A	147	41.64	g.14.1.1,g.32.1.1	91949,91950
1uwdA	103	41.68	d.52.8.2	113447
2qvbA	297	42.70		
1anfA	370	43.46	c.94.1.1	35776
1wnyA	186	43.82		
1vkwA	218	47.54	d.90.1.2	108695
2ifxA	114	50.86		
3tglA	269	51.95	c.69.1.17	34733
2f6kA	307	52.66	c.1.9.15	133047
1hz6A	72	53.36	d.15.7.1	61429
2qklA	127	55.63		
2cruA	118	61.49	a.5.6.1	130742
1zchA	255	62.21	d.90.1.1	124908
3bm1A	183	63.29		
1a9xA	1058	63.32	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
2e1nA	138	65.85		
2qazA	128	65.88		
5hpgA	84	66.45	g.14.1.1	44642
2f6eA	127	69.64		
1udzA	182	71.76	b.51.1.1	99239
1qx2A	76	72.33	a.39.1.1	104622
1zgkA	308	72.83		
2czdA	208	77.05	c.1.2.3	131045
2gwgA	350	84.92	c.1.9.15	135805
1wkaA	147	86.34	b.51.1.1	120978
2e5aA	347	87.13