# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	1.38e-10		
2on8A	56	1.58e-10		
2igdA	61	1.72e-10	d.15.7.1	37821
2gi9A	56	1.88e-10		
2igd	61	2.03e-10		
2b7eA	59	1.784		
1cvrA	435	5.175	b.1.18.12,c.17.1.2	21949,31006
2qklA	127	25.46		
1e9lA	377	41.04	c.1.8.5,d.26.3.1	59395,59396
1vf8A	377	50.52	c.1.8.5,d.26.3.1	120029,120030
2f15A	96	55.30		
1r1hA	696	56.15	d.92.1.4	104756
1y4oA	104	56.55		
2incA	491	61.73	a.25.1.2	137524
1krnA	88	63.93	g.14.1.1	44629
1i71A	83	64.98	g.14.1.1	61864
2f6eA	127	66.44		
2ek8A	421	66.71		
2qsbA	89	68.18		
1hz6A	72	70.11	d.15.7.1	61429
2dxcB	157	71.55		
2hz5A	106	71.60		
1pchA	88	73.91	d.94.1.1	40564
1sc3A	178	74.37	c.17.1.1	105416
2dk5A	91	76.13		
2i7hA	189	77.17		
1v2yA	105	80.04	d.15.1.1	100275
1z0mA	96	80.19		
2fm9A	215	81.17	a.257.1.1	133770
2i5nM	323	83.25	f.26.1.1	137067
1fioA	196	83.72	a.47.2.1	17773
3cjsA	60	89.13		
1ql3A	99	89.60	a.3.1.1	15822