# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	4.76e-10		
2on8A	56	5.46e-10		
2igdA	61	6.02e-10	d.15.7.1	37821
2gi9A	56	6.62e-10		
2igd	61	6.84e-10		
2b7eA	59	1.570		
1cvrA	435	6.585	b.1.18.12,c.17.1.2	21949,31006
2qklA	127	25.41		
1r1hA	696	30.45	d.92.1.4	104756
1e9lA	377	45.23	c.1.8.5,d.26.3.1	59395,59396
2f15A	96	45.66		
2i7hA	189	47.16		
3cjsA	60	48.83		
1dmtA	696	51.01	d.92.1.4	40296
1vf8A	377	53.20	c.1.8.5,d.26.3.1	120029,120030
1v2yA	105	55.53	d.15.1.1	100275
1a9xA	1058	58.55	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
1krnA	88	61.78	g.14.1.1	44629
2qsbA	89	61.87		
1y4oA	104	63.11		
2ek8A	421	65.21		
1i71A	83	66.94	g.14.1.1	61864
1hz6A	72	67.31	d.15.7.1	61429
2e5aA	347	70.91		
1zoxA	113	72.49		
2jt1A	77	73.13		
2cruA	118	73.99	a.5.6.1	130742
2qzgA	94	75.37		
1ql3A	99	75.86	a.3.1.1	15822
1z0mA	96	77.87		
2f6eA	127	78.18		
2hz5A	106	79.10		
2fm9A	215	79.30	a.257.1.1	133770
2q00A	129	82.71		
2incA	491	86.26	a.25.1.2	137524
1nl1A	147	86.59	g.14.1.1,g.32.1.1	91949,91950
1pchA	88	86.89	d.94.1.1	40564
1z0nA	96	88.93