# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	3.95e-10		
2on8A	56	4.12e-10		
2igdA	61	4.90e-10	d.15.7.1	37821
2gi9A	56	5.32e-10		
2igd	61	5.73e-10		
2b7eA	59	1.918		
1cvrA	435	5.915	b.1.18.12,c.17.1.2	21949,31006
2qklA	127	24.66		
1r1hA	696	32.90	d.92.1.4	104756
1e9lA	377	37.19	c.1.8.5,d.26.3.1	59395,59396
2f15A	96	47.19		
1vf8A	377	49.43	c.1.8.5,d.26.3.1	120029,120030
2i7hA	189	50.91		
3cjsA	60	51.44		
1dmtA	696	52.31	d.92.1.4	40296
1a9xA	1058	52.76	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
1krnA	88	57.68	g.14.1.1	44629
2qsbA	89	59.30		
1i71A	83	61.48	g.14.1.1	61864
1hz6A	72	62.39	d.15.7.1	61429
1y4oA	104	62.54		
2ek8A	421	62.91		
1zoxA	113	65.29		
2hz5A	106	67.67		
2jt1A	77	68.91		
1z0mA	96	74.17		
2f6eA	127	79.99		
1nl1A	147	80.51	g.14.1.1,g.32.1.1	91949,91950
2qzgA	94	80.62		
1z0nA	96	81.16		
1pchA	88	83.61	d.94.1.1	40564
2incA	491	83.61	a.25.1.2	137524
2e5aA	347	84.09		
1v2yA	105	84.81	d.15.1.1	100275
2cruA	118	88.11	a.5.6.1	130742
2dk5A	91	88.30