# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	2.66e-09	d.15.7.1	37821
2qmtA	56	2.84e-09		
2on8A	56	2.93e-09		
2gi9A	56	3.20e-09		
2igd	61	3.26e-09		
1cvrA	435	2.021	b.1.18.12,c.17.1.2	21949,31006
2b7eA	59	2.626		
2qzgA	94	25.31		
2qsbA	89	25.79		
1fioA	196	31.03	a.47.2.1	17773
2e7jA	371	39.40		
1pchA	88	40.15	d.94.1.1	40564
1y4oA	104	42.46		
1vr7A	142	45.32	d.156.1.2	120443
1ql3A	99	56.25	a.3.1.1	15822
1ae9A	179	56.40	d.163.1.1	42153
1deeG	54	57.46	a.8.1.1	16343
1tluA	130	58.64	d.156.1.2	107139
1qn2A	100	60.73	a.3.1.1	15882
1qx2A	76	78.91	a.39.1.1	104622
3cu5A	141	79.61		
1x2gA	337	81.02		
1yo5C	97	83.50	a.4.5.21	123768
2pjkA	178	87.89		
1zpvA	91	89.51	d.58.18.7	125475