# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	2.57e-12		
2igdA	61	3.04e-12	d.15.7.1	37821
2qmtA	56	3.40e-12		
2gi9A	56	3.70e-12		
2igd	61	3.77e-12		
2b7eA	59	1.054		
1cvrA	435	3.133	b.1.18.12,c.17.1.2	21949,31006
2qklA	127	20.99		
2i7hA	189	22.47		
1x2gA	337	24.58		
1e9lA	377	30.67	c.1.8.5,d.26.3.1	59395,59396
1y4oA	104	42.22		
2ifxA	114	43.60		
1vf8A	377	45.38	c.1.8.5,d.26.3.1	120029,120030
3cjsA	60	46.55		
1sc3A	178	47.38	c.17.1.1	105416
2d1pA	140	49.70	c.114.1.1	131136
1ql3A	99	50.93	a.3.1.1	15822
1a9xA	1058	57.73	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
3bm1A	183	58.01		
2ek8A	421	59.72		
1zchA	255	62.41	d.90.1.1	124908
2i5nM	323	63.66	f.26.1.1	137067
2f6eA	127	64.80		
2dxcB	157	67.21		
1vkwA	218	68.61	d.90.1.2	108695
2cjjA	93	69.41	a.4.1.3	130540
2f15A	96	69.81		
2e5aA	347	71.73		
1z0nA	96	74.12		
2hy5A	130	75.65	c.114.1.1	136865
1pchA	88	77.09	d.94.1.1	40564
1qx2A	76	77.50	a.39.1.1	104622
1r1hA	696	77.52	d.92.1.4	104756
1z0mA	96	78.04		
2incA	491	78.22	a.25.1.2	137524
1nl1A	147	88.76	g.14.1.1,g.32.1.1	91949,91950
2czdA	208	89.81	c.1.2.3	131045