# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2on8A 56 8.99e-16 2igdA 61 1.14e-15 d.15.7.1 37821 2qmtA 56 1.18e-15 2gi9A 56 1.24e-15 2igd 61 1.56e-15 2b7eA 59 1.053 1qqcA 773 1.240 c.55.3.5,e.8.1.1 33724,43013 2pgeA 377 1.578 1t17A 148 2.101 d.129.3.6 112215 1dfaA 454 2.887 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 2nsfA 261 3.074 2cmtA 172 3.728 1u55A 188 5.263 d.278.1.1 107677 2qazA 128 5.670 1ec7A 446 6.680 c.1.11.2,d.54.1.1 29218,38862 1bpoA 494 6.731 a.118.1.4,b.69.6.1 19143,27670 2o09A 189 11.18 1ohvA 472 12.15 c.67.1.4 93031 2v7kA 361 14.23 2dskA 311 15.28 1nrwA 288 17.01 c.108.1.10 86128 2qklA 127 17.07 1xzzA 246 18.12 1hkkA 364 19.64 c.1.8.5,d.26.3.1 90634,90635 2b7yA 182 20.05 1oq1A 223 20.25 b.29.1.17 93408 1ve5A 311 20.34 c.79.1.1 120013 2rmcA 182 21.50 b.62.1.1 27491 1qqfA 277 21.54 a.102.4.4 18875 2cjjA 93 21.69 a.4.1.3 130540 3htsB 102 23.96 a.4.5.22 16175 1r9lA 309 25.64 c.94.1.1 97262 2bo9A 308 29.04 c.56.5.1 128897 1nl1A 147 31.05 g.14.1.1,g.32.1.1 91949,91950 2jisA 515 31.07 2incA 491 31.66 a.25.1.2 137524 2z3zA 706 33.06 2i7hA 189 37.52 1ojjA 402 37.56 b.29.1.10 93130 1anfA 370 37.63 c.94.1.1 35776 2nutA 769 37.74 3cncA 220 37.79 2f68X 313 38.39 1tltA 319 38.87 c.2.1.3,d.81.1.5 107135,107136 1sz6A 249 40.07 d.165.1.1 112171 1ax4A 467 40.10 c.67.1.2 34391 2yziA 138 40.58 2vduB 450 40.80 2ek8A 421 41.05 1pieA 419 41.18 d.14.1.5,d.58.26.7 94706,94707 2jbvA 546 43.77 2furA 209 43.85 b.45.1.1 134185 1s96A 219 44.13 c.37.1.1 98740 2ozpA 345 45.64 2cfcA 250 46.25 1nwzA 125 47.06 d.110.3.1 86370 1xwwA 157 47.61 3pyp 125 48.14 3cpgA 282 48.94 1p99A 295 49.43 c.94.1.1 94384 1qavA 90 49.76 b.36.1.1 24777 2ob9A 130 50.23 2qz8A 149 51.14 1hufA 140 51.88 d.195.1.1 61272 2j5aA 110 52.12 1bvyF 191 53.26 c.23.5.1 31207 1at3A 247 53.37 b.57.1.1 27021 1ed5A 444 53.96 d.174.1.1 42530 2f6eA 127 55.76 1htyA 1015 56.51 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2culA 232 56.72 c.3.1.7 130813 2qeeA 437 58.29 2pa7A 141 59.21 1hd7A 318 61.86 d.151.1.1 41780 1itxA 419 62.67 c.1.8.5,d.26.3.1 71425,71426 2jhmF 218 63.57 2hz5A 106 63.98 2hpvA 208 64.30 1uv4A 293 64.65 b.67.2.1 119705 2airB 153 64.77 d.58.2.1,g.41.7.1 126832,126833 1wdcC 156 65.56 a.39.1.5 17317 2i5vO 251 66.60 3c99A 432 66.83 2q9kA 151 66.87 1q7fA 286 67.04 b.68.9.1 96036 1zz1A 369 67.40 1qydA 313 67.71 c.2.1.2 96583 2o2zA 323 68.37 3c2uA 538 69.08 2ifxA 114 69.39 1zchA 255 69.64 d.90.1.1 124908 3bwlA 126 69.76 1y4oA 104 71.15 1uwvA 433 71.55 b.40.4.12,c.66.1.40 100128,100129 1ydnA 295 72.11 1xa0A 328 75.24 b.35.1.2,c.2.1.1 115021,115022 2bm0A 691 75.48 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2iv2X 715 75.49 b.52.2.2,c.81.1.1 137714,137715 1w8oA 601 77.26 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1f00I 282 78.13 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1a78A 134 79.12 b.29.1.3 24212 1v04A 355 81.62 b.68.6.2 100240 2bypA 214 82.30 2vlaA 285 82.90 2po3A 424 84.21 2d4rA 147 84.98 d.129.3.6 131256 2z6wA 165 85.55 2nxqA 134 86.46 2q00A 129 88.96 2z07A 420 89.02 3cjsA 60 89.05 1kcwA 1046 89.38 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156