# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	1.75e-11		
2igdA	61	2.09e-11	d.15.7.1	37821
2gi9A	56	2.25e-11		
2qmtA	56	2.41e-11		
2igd	61	2.58e-11		
2b7eA	59	2.201		
1cvrA	435	3.419	b.1.18.12,c.17.1.2	21949,31006
2qklA	127	22.55		
2i7hA	189	32.04		
1x2gA	337	35.04		
1e9lA	377	39.71	c.1.8.5,d.26.3.1	59395,59396
1vf8A	377	42.35	c.1.8.5,d.26.3.1	120029,120030
2ifxA	114	44.46		
1ql3A	99	47.49	a.3.1.1	15822
1y4oA	104	50.62		
1r1hA	696	54.29	d.92.1.4	104756
1sc3A	178	56.11	c.17.1.1	105416
2ek8A	421	61.44		
3cjsA	60	61.58		
1a9xA	1058	63.42	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
2d1pA	140	65.12	c.114.1.1	131136
3bm1A	183	69.92		
2f15A	96	70.91		
2e5aA	347	72.83		
1z0nA	96	73.74		
1z0mA	96	76.48		
1zchA	255	78.36	d.90.1.1	124908
1nl1A	147	80.23	g.14.1.1,g.32.1.1	91949,91950
1qx2A	76	82.57	a.39.1.1	104622
2f6eA	127	86.87		
2qsbA	89	87.78		
1gxmA	332	89.33	a.102.5.1	76371