# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	5.38e-12		
2igdA	61	5.55e-12	d.15.7.1	37821
2qmtA	56	6.40e-12		
2igd	61	6.84e-12		
2gi9A	56	7.05e-12		
2b7eA	59	1.555		
1cvrA	435	5.653	b.1.18.12,c.17.1.2	21949,31006
1v2yA	105	17.04	d.15.1.1	100275
3cjsA	60	20.43		
2f15A	96	22.39		
1e9lA	377	23.21	c.1.8.5,d.26.3.1	59395,59396
1vf8A	377	24.61	c.1.8.5,d.26.3.1	120029,120030
1z0mA	96	28.25		
1z0nA	96	29.21		
1ql3A	99	35.27	a.3.1.1	15822
1qn2A	100	37.38	a.3.1.1	15882
1krnA	88	38.68	g.14.1.1	44629
2i7hA	189	40.44		
1hz6A	72	52.85	d.15.7.1	61429
1d3cA	686	53.24	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1r1hA	696	58.11	d.92.1.4	104756
1i71A	83	60.15	g.14.1.1	61864
3tglA	269	61.93	c.69.1.17	34733
1sc3A	178	64.70	c.17.1.1	105416
1nl1A	147	65.27	g.14.1.1,g.32.1.1	91949,91950
2f6eA	127	65.68		
2uvkA	357	66.58		
2q00A	129	69.19		
1y4oA	104	75.90		
2qklA	127	81.73		
2hz5A	106	82.12		
1x2gA	337	82.95		
2ifxA	114	83.36		
1zchA	255	85.32	d.90.1.1	124908
1fioA	196	87.91	a.47.2.1	17773