# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	1.20e-11		
2igdA	61	1.32e-11	d.15.7.1	37821
2qmtA	56	1.54e-11		
2igd	61	1.62e-11		
2gi9A	56	1.70e-11		
2b7eA	59	1.801		
1cvrA	435	5.080	b.1.18.12,c.17.1.2	21949,31006
3cjsA	60	19.82		
1z0mA	96	22.82		
2f15A	96	23.30		
1vf8A	377	24.41	c.1.8.5,d.26.3.1	120029,120030
1z0nA	96	24.95		
1e9lA	377	38.04	c.1.8.5,d.26.3.1	59395,59396
1krnA	88	39.75	g.14.1.1	44629
1i71A	83	41.95	g.14.1.1	61864
2f6eA	127	48.48		
1r1hA	696	50.91	d.92.1.4	104756
1hz6A	72	55.53	d.15.7.1	61429
2hz5A	106	55.60		
1y4oA	104	56.56		
1v2yA	105	57.52	d.15.1.1	100275
2i7hA	189	59.94		
1ql3A	99	67.02	a.3.1.1	15822
2ifxA	114	72.86		
2vpjA	301	76.34		
1sc3A	178	77.72	c.17.1.1	105416
2qklA	127	78.31		
2incA	491	78.47	a.25.1.2	137524
1nl1A	147	78.90	g.14.1.1,g.32.1.1	91949,91950
1zoxA	113	80.60		
1pchA	88	81.81	d.94.1.1	40564
1x2gA	337	89.90		
1fioA	196	89.98	a.47.2.1	17773