# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	2.73e-12	d.15.7.1	37821
2igd	61	3.30e-12		
2qmtA	56	3.55e-12		
2on8A	56	3.62e-12		
2gi9A	56	3.71e-12		
2b7eA	59	3.715		
2qklA	127	3.752		
1cvrA	435	5.403	b.1.18.12,c.17.1.2	21949,31006
1x2gA	337	23.78		
1sc3A	178	24.73	c.17.1.1	105416
1v0jA	399	30.79		
1dqgA	135	32.06	b.42.2.2	25579
2dxcB	157	37.15		
2czdA	208	43.86	c.1.2.3	131045
2qzgA	94	47.51		
1shsA	147	49.92	b.15.1.1	23675
1umpA	631	51.79	a.102.4.2,a.102.4.2	99619,99620
1gjsA	65	52.31	a.8.1.2	60578
2i5nM	323	57.56	f.26.1.1	137067
2qsbA	89	58.40		
1q1uA	144	59.13	b.42.1.1	95608
1vf8A	377	59.63	c.1.8.5,d.26.3.1	120029,120030
1e9lA	377	60.27	c.1.8.5,d.26.3.1	59395,59396
3bs3A	76	66.05		
2q43A	418	70.73	c.56.5.4,d.58.19.1	139821,139822
1zoxA	113	78.79		
3cjsA	60	80.72