# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qmtA	56	4.19e-10		
2gi9A	56	4.19e-10		
2on8A	56	4.35e-10		
2igdA	61	5.31e-10	d.15.7.1	37821
2igd	61	7.24e-10		
1ysjA	404	5.779	c.56.5.4,d.58.19.1	123975,123976
2ozzA	231	6.446		
3c5iA	369	10.31		
1lfwA	470	10.99	c.56.5.4,d.58.19.1	77942,77943
1fohA	664	11.50	c.3.1.2,c.47.1.10,d.16.1.2	30381,33078,37900
1fx3A	169	12.83	d.33.1.1	38524
1sqeA	109	13.11	d.58.4.5	105908
1louA	101	16.31	d.58.14.1	39323
1zpvA	91	19.95	d.58.18.7	125475
3c19A	186	21.79		
2afwA	329	22.35	c.56.5.8	126707
2nqtA	352	26.90		
1d0iA	156	28.85	c.23.13.1	31383
1bxm	99	30.43		
2zodA	345	31.51		
1mwqA	101	32.38	d.58.4.7	91481
1fit	147	32.60		
1cqmA	101	34.02	d.58.14.1	39321
1v9jA	113	35.40	d.52.6.1	100542
2yydA	345	36.51		
1vmbA	140	36.94	d.58.14.1	113672
1cvrA	435	37.56	b.1.18.12,c.17.1.2	21949,31006
1s7iA	124	40.44	d.58.4.9	105353
2gqpA	236	44.00	d.122.1.1	135513
1j75A	67	45.22	a.4.5.19	62673
1p2zA	968	45.72	b.121.2.2,b.121.2.2	93962,93963
2cztA	167	47.64		
1gm6A	175	47.94	b.60.1.1	70272
1wj9A	211	48.38	d.58.53.1,d.58.53.1	114694,114695
1lriA	98	48.44	a.134.1.1	74223
2d56A	53	50.23		
1a9xA	1058	51.39	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
1ufmA	84	52.97	a.4.5.47	107816
1gtzA	156	53.88	c.23.13.1	70539
2joeA	139	56.42		
1qy1A	174	56.78	b.60.1.1	96568
1lcyA	325	59.55	b.36.1.4,b.47.1.1	73834,73835
1lf7A	182	59.72	b.60.1.1	73878
2uubJ	105	59.80	d.58.15.1	139941
1xs5A	241	59.86	c.94.1.1	115912
1vgyA	393	61.20	c.56.5.4,d.58.19.1	100620,100621
1f3vA	179	62.36	d.58.22.1	39382
1p30A	952	63.02	b.121.2.2,b.121.2.2	93964,93965
1koe	172	63.29		
1koeA	172	63.78	d.169.1.5	42448
1peaA	385	65.35	c.93.1.1	35662
2ebeA	106	65.76		
2ebuA	112	65.90		
1u6lA	149	66.95	d.32.1.7	113067
1ccrA	111	68.02	a.3.1.1	15877
3bt7A	369	68.42		
1qx2A	76	68.92	a.39.1.1	104622
1bebA	162	69.08	b.60.1.1	27115
1hufA	140	69.21	d.195.1.1	61272
2b4zA	104	74.24		
2hiqA	113	75.08	d.58.4.12	136529
3bjoA	103	75.60		
1vloA	381	76.03	b.44.2.1,d.250.1.1	108838,108839
2aibA	98	76.04	a.134.1.1	126824
1vr7A	142	77.74	d.156.1.2	120443
1htp	131	80.75		
2hlvA	160	81.94		
2qt7A	91	82.43		
2sakA	121	82.50	d.15.5.1	37711
1p99A	295	84.20	c.94.1.1	94384
2pw4A	188	87.28		
1smtA	122	89.06	a.4.5.5	16109
2hc5A	117	89.58