This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA T A 2 2 NATAA T A 3 3 NATAA Y A 4 4 NATAA K A 5 5 NATAA L A 6 6 NATAA I A 7 7 NATAA L A 8 8 NATAA N A 9 9 NATAA L A 10 10 NATAA K A 11 11 NATAA Q A 12 12 NATAA A A 13 13 NATAA K A 14 14 NATAA E A 15 15 NATAA E A 16 16 NATAA A A 17 17 NATAA I A 18 18 NATAA K A 19 19 NATAA E A 20 20 NATAA L A 21 21 NATAA V A 22 22 NATAA D A 23 23 NATAA A A 24 24 NATAA G A 25 25 NATAA T A 26 26 NATAA A A 27 27 NATAA E A 28 28 NATAA K A 29 29 NATAA Y A 30 30 NATAA I A 31 31 NATAA K A 32 32 NATAA L A 33 33 NATAA I A 34 34 NATAA A A 35 35 NATAA N A 36 36 NATAA A A 37 37 NATAA K A 38 38 NATAA T A 39 39 NATAA V A 40 40 NATAA E A 41 41 NATAA G A 42 42 NATAA V A 43 43 NATAA W A 44 44 NATAA T A 45 45 NATAA L A 46 46 NATAA K A 47 47 NATAA D A 48 48 NATAA E A 49 49 NATAA I A 50 50 NATAA K A 51 51 NATAA T A 52 52 NATAA F A 53 53 NATAA T A 54 54 NATAA V A 55 55 NATAA T A 56 56 NATAA E