PFRMAT RR TARGET T0498 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 TTYKLILNLKQAKEEAIKELVDAGTAEKYIKLIANAKTVEGVWTLKDEIK TFTVTE 4 13 0 8 0.46015 4 14 0 8 0.344452 4 15 0 8 0.46935 4 16 0 8 0.618639 4 17 0 8 0.578031 4 19 0 8 0.464725 4 20 0 8 0.648736 4 21 0 8 0.540224 4 23 0 8 0.560026 4 25 0 8 0.329625 4 26 0 8 0.565223 4 29 0 8 0.587769 4 30 0 8 0.562675 4 33 0 8 0.561105 4 34 0 8 0.542384 4 39 0 8 0.506072 4 40 0 8 0.361407 4 41 0 8 0.662946 4 42 0 8 0.629875 4 43 0 8 0.759192 4 44 0 8 0.704512 4 45 0 8 0.74493 4 46 0 8 0.481886 4 47 0 8 0.490143 4 48 0 8 0.472368 4 49 0 8 0.634699 4 50 0 8 0.678376 4 51 0 8 0.754754 4 52 0 8 0.875788 4 53 0 8 0.804145 5 14 0 8 0.357933 5 15 0 8 0.574259 5 16 0 8 0.819168 5 17 0 8 0.769826 5 18 0 8 0.349461 5 19 0 8 0.53279 5 20 0 8 0.832496 5 21 0 8 0.757302 5 22 0 8 0.353264 5 23 0 8 0.699165 5 25 0 8 0.40076 5 26 0 8 0.826576 5 29 0 8 0.754093 5 30 0 8 0.850377 5 31 0 8 0.333533 5 33 0 8 0.742575 5 34 0 8 0.774486 5 39 0 8 0.65867 5 40 0 8 0.371585 5 41 0 8 0.789692 5 42 0 8 0.703242 5 43 0 8 0.886542 5 44 0 8 0.728152 5 45 0 8 0.802337 5 46 0 8 0.379952 5 47 0 8 0.481185 5 48 0 8 0.527369 5 49 0 8 0.733173 5 50 0 8 0.782389 5 51 0 8 0.783176 5 52 0 8 0.926092 5 53 0 8 0.758338 6 15 0 8 0.566103 6 16 0 8 0.8145 6 17 0 8 0.753093 6 18 0 8 0.330085 6 19 0 8 0.49681 6 20 0 8 0.810261 6 21 0 8 0.730205 6 22 0 8 0.337901 6 23 0 8 0.631985 6 25 0 8 0.374121 6 26 0 8 0.828087 6 29 0 8 0.724129 6 30 0 8 0.84391 6 33 0 8 0.707326 6 34 0 8 0.744486 6 39 0 8 0.659567 6 40 0 8 0.457575 6 41 0 8 0.82083 6 42 0 8 0.741221 6 43 0 8 0.883602 6 44 0 8 0.724744 6 45 0 8 0.753331 6 46 0 8 0.355355 6 47 0 8 0.514977 6 48 0 8 0.583746 6 49 0 8 0.76584 6 50 0 8 0.80345 6 51 0 8 0.77798 6 52 0 8 0.885545 6 53 0 8 0.683974 7 16 0 8 0.892913 7 17 0 8 0.845442 7 18 0 8 0.43828 7 19 0 8 0.626843 7 20 0 8 0.883286 7 21 0 8 0.822426 7 22 0 8 0.44062 7 23 0 8 0.758567 7 25 0 8 0.508995 7 26 0 8 0.886399 7 27 0 8 0.401266 7 29 0 8 0.816158 7 30 0 8 0.893629 7 31 0 8 0.423812 7 32 0 8 0.360989 7 33 0 8 0.776199 7 34 0 8 0.797784 7 38 0 8 0.347346 7 39 0 8 0.709906 7 40 0 8 0.520353 7 41 0 8 0.854657 7 42 0 8 0.749228 7 43 0 8 0.893145 7 44 0 8 0.719559 7 45 0 8 0.783917 7 46 0 8 0.371763 7 47 0 8 0.571126 7 48 0 8 0.633754 7 49 0 8 0.789671 7 50 0 8 0.81306 7 51 0 8 0.744774 7 52 0 8 0.868913 7 53 0 8 0.601253 8 17 0 8 0.549437 8 19 0 8 0.401022 8 20 0 8 0.570292 8 21 0 8 0.457088 8 23 0 8 0.431545 8 25 0 8 0.342044 8 26 0 8 0.518505 8 29 0 8 0.471948 8 30 0 8 0.410907 8 33 0 8 0.369584 8 39 0 8 0.467559 8 40 0 8 0.457413 8 41 0 8 0.725318 8 42 0 8 0.654775 8 43 0 8 0.72093 8 44 0 8 0.608253 8 45 0 8 0.595684 8 46 0 8 0.384821 8 47 0 8 0.523795 8 48 0 8 0.574664 8 49 0 8 0.669547 8 50 0 8 0.655559 8 51 0 8 0.610482 8 52 0 8 0.613091 8 53 0 8 0.485127 9 19 0 8 0.450917 9 20 0 8 0.665707 9 21 0 8 0.519523 9 23 0 8 0.535697 9 25 0 8 0.380465 9 26 0 8 0.625353 9 29 0 8 0.595027 9 30 0 8 0.501541 9 33 0 8 0.476158 9 34 0 8 0.36924 9 38 0 8 0.328857 9 39 0 8 0.490585 9 40 0 8 0.425496 9 41 0 8 0.708576 9 42 0 8 0.615576 9 43 0 8 0.721668 9 44 0 8 0.564741 9 45 0 8 0.59381 9 46 0 8 0.371176 9 47 0 8 0.513379 9 48 0 8 0.54933 9 49 0 8 0.644245 9 50 0 8 0.642006 9 51 0 8 0.578166 9 52 0 8 0.63909 9 53 0 8 0.467303 10 20 0 8 0.366815 10 41 0 8 0.494573 10 42 0 8 0.409923 10 43 0 8 0.455073 10 44 0 8 0.386908 10 45 0 8 0.394222 10 47 0 8 0.385762 10 48 0 8 0.391043 10 49 0 8 0.437306 10 50 0 8 0.398365 10 51 0 8 0.379468 10 52 0 8 0.357545 11 20 0 8 0.350396 11 41 0 8 0.388513 11 42 0 8 0.351779 11 43 0 8 0.402139 11 44 0 8 0.363324 11 45 0 8 0.382095 11 47 0 8 0.331522 11 48 0 8 0.331708 11 49 0 8 0.358539 11 50 0 8 0.332545 11 51 0 8 0.33981 11 52 0 8 0.337307 12 21 0 8 0.631092 12 22 0 8 0.362156 12 23 0 8 0.646934 12 25 0 8 0.497463 12 26 0 8 0.760885 12 27 0 8 0.328513 12 29 0 8 0.71103 12 30 0 8 0.663674 12 31 0 8 0.331266 12 32 0 8 0.347469 12 33 0 8 0.583473 12 34 0 8 0.48817 12 39 0 8 0.415599 12 41 0 8 0.54949 12 42 0 8 0.451831 12 43 0 8 0.633361 12 44 0 8 0.468383 12 45 0 8 0.561938 12 47 0 8 0.397841 12 48 0 8 0.410607 12 49 0 8 0.487848 12 50 0 8 0.49489 12 51 0 8 0.432101 12 52 0 8 0.579841 12 53 0 8 0.377965 13 23 0 8 0.507081 13 25 0 8 0.403545 13 26 0 8 0.559147 13 29 0 8 0.56219 13 30 0 8 0.439501 13 33 0 8 0.419679 13 39 0 8 0.335038 13 41 0 8 0.47492 13 42 0 8 0.368033 13 43 0 8 0.465826 13 44 0 8 0.37829 13 45 0 8 0.433328 13 47 0 8 0.381699 13 48 0 8 0.36343 13 49 0 8 0.414592 13 50 0 8 0.365006 13 51 0 8 0.350408 13 52 0 8 0.38533 14 23 0 8 0.365631 14 26 0 8 0.340085 14 29 0 8 0.404392 14 41 0 8 0.37795 14 43 0 8 0.357409 14 45 0 8 0.346355 14 49 0 8 0.342289 15 25 0 8 0.326351 15 26 0 8 0.481436 15 29 0 8 0.506803 15 30 0 8 0.408839 15 33 0 8 0.381443 15 41 0 8 0.415205 15 43 0 8 0.431645 15 44 0 8 0.33557 15 45 0 8 0.40388 15 47 0 8 0.344449 15 49 0 8 0.382029 15 50 0 8 0.338054 15 51 0 8 0.347613 15 52 0 8 0.386175 16 25 0 8 0.530905 16 26 0 8 0.785471 16 27 0 8 0.368547 16 28 0 8 0.330395 16 29 0 8 0.724351 16 30 0 8 0.713571 16 31 0 8 0.362066 16 32 0 8 0.375278 16 33 0 8 0.619148 16 34 0 8 0.550478 16 39 0 8 0.453565 16 41 0 8 0.589615 16 42 0 8 0.44008 16 43 0 8 0.668727 16 44 0 8 0.453821 16 45 0 8 0.587027 16 47 0 8 0.416276 16 48 0 8 0.405049 16 49 0 8 0.518609 16 50 0 8 0.497651 16 51 0 8 0.44322 16 52 0 8 0.607444 16 53 0 8 0.380561 17 26 0 8 0.857906 17 27 0 8 0.494478 17 28 0 8 0.444997 17 29 0 8 0.791073 17 30 0 8 0.77228 17 31 0 8 0.451957 17 32 0 8 0.473 17 33 0 8 0.705703 17 34 0 8 0.650016 17 35 0 8 0.347628 17 36 0 8 0.35694 17 38 0 8 0.341009 17 39 0 8 0.572878 17 41 0 8 0.686412 17 42 0 8 0.478682 17 43 0 8 0.735414 17 44 0 8 0.48125 17 45 0 8 0.651518 17 47 0 8 0.479873 17 48 0 8 0.455473 17 49 0 8 0.596669 17 50 0 8 0.559293 17 51 0 8 0.480672 17 52 0 8 0.673222 17 53 0 8 0.376837 18 29 0 8 0.563421 18 30 0 8 0.458552 18 33 0 8 0.43954 18 34 0 8 0.33965 18 39 0 8 0.376563 18 41 0 8 0.485847 18 43 0 8 0.452628 18 45 0 8 0.42828 18 47 0 8 0.390137 18 48 0 8 0.328655 18 49 0 8 0.415616 18 50 0 8 0.334538 18 51 0 8 0.332753 18 52 0 8 0.378725 19 29 0 8 0.516942 19 30 0 8 0.422179 19 33 0 8 0.388069 19 41 0 8 0.435875 19 43 0 8 0.438755 19 45 0 8 0.410698 19 47 0 8 0.346786 19 49 0 8 0.38724 19 50 0 8 0.328173 19 51 0 8 0.345458 19 52 0 8 0.391136 20 29 0 8 0.77114 20 30 0 8 0.797428 20 31 0 8 0.405433 20 32 0 8 0.411783 20 33 0 8 0.679321 20 34 0 8 0.654829 20 39 0 8 0.505747 20 41 0 8 0.636968 20 42 0 8 0.451734 20 43 0 8 0.7302 20 44 0 8 0.463561 20 45 0 8 0.629672 20 47 0 8 0.413624 20 48 0 8 0.399569 20 49 0 8 0.555842 20 50 0 8 0.534449 20 51 0 8 0.470046 20 52 0 8 0.672293 20 53 0 8 0.399918 21 30 0 8 0.848387 21 31 0 8 0.465106 21 32 0 8 0.475059 21 33 0 8 0.748224 21 34 0 8 0.73298 21 35 0 8 0.336447 21 36 0 8 0.33082 21 38 0 8 0.331302 21 39 0 8 0.599856 21 41 0 8 0.712538 21 42 0 8 0.501884 21 43 0 8 0.77854 21 44 0 8 0.503247 21 45 0 8 0.683212 21 47 0 8 0.47528 21 48 0 8 0.450909 21 49 0 8 0.616042 21 50 0 8 0.577704 21 51 0 8 0.493226 21 52 0 8 0.704603 21 53 0 8 0.390733 22 33 0 8 0.40141 22 39 0 8 0.342774 22 41 0 8 0.476951 22 42 0 8 0.336373 22 43 0 8 0.476783 22 44 0 8 0.342012 22 45 0 8 0.44601 22 47 0 8 0.37277 22 48 0 8 0.327728 22 49 0 8 0.406914 22 50 0 8 0.324591 22 51 0 8 0.335414 22 52 0 8 0.360781 23 32 0 8 0.51731 23 33 0 8 0.743051 23 34 0 8 0.662721 23 35 0 8 0.359914 23 36 0 8 0.395362 23 37 0 8 0.324927 23 39 0 8 0.605746 23 41 0 8 0.712136 23 42 0 8 0.475804 23 43 0 8 0.76254 23 44 0 8 0.467915 23 45 0 8 0.695835 23 47 0 8 0.486202 23 48 0 8 0.458809 23 49 0 8 0.629948 23 50 0 8 0.563431 23 51 0 8 0.502974 23 52 0 8 0.665052 23 53 0 8 0.382574 25 41 0 8 0.327983 25 43 0 8 0.344256 25 45 0 8 0.329118 26 35 0 8 0.378992 26 36 0 8 0.365985 26 39 0 8 0.662803 26 41 0 8 0.766241 26 42 0 8 0.528401 26 43 0 8 0.829629 26 44 0 8 0.526574 26 45 0 8 0.734684 26 47 0 8 0.464015 26 48 0 8 0.446695 26 49 0 8 0.664083 26 50 0 8 0.610253 26 51 0 8 0.505874 26 52 0 8 0.730143 26 53 0 8 0.367839 27 36 0 8 0.425929 27 37 0 8 0.378718 27 38 0 8 0.370697 27 39 0 8 0.553024 27 41 0 8 0.648164 27 42 0 8 0.439634 27 43 0 8 0.676009 27 44 0 8 0.413019 27 45 0 8 0.613983 27 47 0 8 0.503885 27 48 0 8 0.427494 27 49 0 8 0.556356 27 50 0 8 0.466918 27 51 0 8 0.443893 27 52 0 8 0.547199 27 53 0 8 0.336129 28 41 0 8 0.405195 28 43 0 8 0.381458 28 45 0 8 0.357326 28 49 0 8 0.338766 29 39 0 8 0.470891 29 41 0 8 0.587818 29 42 0 8 0.36005 29 43 0 8 0.650946 29 44 0 8 0.360089 29 45 0 8 0.563267 29 47 0 8 0.369204 29 49 0 8 0.483555 29 50 0 8 0.414378 29 51 0 8 0.3791 29 52 0 8 0.56045 30 39 0 8 0.778302 30 40 0 8 0.331085 30 41 0 8 0.839276 30 42 0 8 0.626048 30 43 0 8 0.893768 30 44 0 8 0.604812 30 45 0 8 0.799661 30 47 0 8 0.52431 30 48 0 8 0.506271 30 49 0 8 0.744842 30 50 0 8 0.703665 30 51 0 8 0.595394 30 52 0 8 0.813073 30 53 0 8 0.432838 31 40 0 8 0.354061 31 41 0 8 0.713724 31 42 0 8 0.498423 31 43 0 8 0.750605 31 44 0 8 0.467875 31 45 0 8 0.69303 31 47 0 8 0.542188 31 48 0 8 0.456294 31 49 0 8 0.602637 31 50 0 8 0.526808 31 51 0 8 0.502924 31 52 0 8 0.632728 31 53 0 8 0.398719 32 41 0 8 0.523722 32 42 0 8 0.323236 32 43 0 8 0.520936 32 45 0 8 0.465736 32 47 0 8 0.364354 32 49 0 8 0.412599 32 50 0 8 0.329924 32 51 0 8 0.340358 32 52 0 8 0.405186 33 42 0 8 0.503889 33 43 0 8 0.792603 33 44 0 8 0.506043 33 45 0 8 0.684432 33 47 0 8 0.416694 33 48 0 8 0.394618 33 49 0 8 0.584895 33 50 0 8 0.566348 33 51 0 8 0.505553 33 52 0 8 0.72139 33 53 0 8 0.429147 34 43 0 8 0.929737 34 44 0 8 0.730574 34 45 0 8 0.864968 34 46 0 8 0.334115 34 47 0 8 0.573887 34 48 0 8 0.59077 34 49 0 8 0.786406 34 50 0 8 0.776866 34 51 0 8 0.686071 34 52 0 8 0.865355 34 53 0 8 0.554959 35 44 0 8 0.517069 35 45 0 8 0.672055 35 46 0 8 0.360792 35 47 0 8 0.540174 35 48 0 8 0.483973 35 49 0 8 0.576458 35 50 0 8 0.547421 35 51 0 8 0.491112 35 52 0 8 0.623518 35 53 0 8 0.428551 36 45 0 8 0.476421 36 47 0 8 0.383192 36 48 0 8 0.325775 36 49 0 8 0.373689 36 50 0 8 0.34461 36 52 0 8 0.414545 38 47 0 8 0.368706 38 48 0 8 0.328045 38 49 0 8 0.359035 38 50 0 8 0.34534 38 51 0 8 0.395799 38 52 0 8 0.448657 38 53 0 8 0.475106 39 48 0 8 0.535551 39 49 0 8 0.643854 39 50 0 8 0.688936 39 51 0 8 0.640234 39 52 0 8 0.837866 39 53 0 8 0.662374 40 49 0 8 0.572853 40 50 0 8 0.587058 40 51 0 8 0.682748 40 52 0 8 0.76946 40 53 0 8 0.793736 41 50 0 8 0.789618 41 51 0 8 0.802058 41 52 0 8 0.920971 41 53 0 8 0.855586 42 51 0 8 0.834929 42 52 0 8 0.910594 42 53 0 8 0.87787 43 52 0 8 0.956928 43 53 0 8 0.873929 44 53 0 8 0.827777 END