PFRMAT RR TARGET T0498 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 TTYKLILNLKQAKEEAIKELVDAGTAEKYIKLIANAKTVEGVWTLKDEIK TFTVTE 4 13 0 8 0.138287 4 14 0 8 0.0675446 4 15 0 8 0.0813177 4 16 0 8 0.134303 4 17 0 8 0.123266 4 19 0 8 0.129279 4 20 0 8 0.143834 4 21 0 8 0.125159 4 23 0 8 0.0769587 4 25 0 8 0.0679478 4 26 0 8 0.113927 4 29 0 8 0.136905 4 30 0 8 0.157627 4 33 0 8 0.111224 4 34 0 8 0.134988 4 39 0 8 0.0511532 4 40 0 8 0.059547 4 41 0 8 0.0599786 4 42 0 8 0.0815794 4 43 0 8 0.08702 4 44 0 8 0.103477 4 45 0 8 0.107284 4 46 0 8 0.074622 4 47 0 8 0.0525838 4 48 0 8 0.0534538 4 49 0 8 0.0773188 4 50 0 8 0.0650563 4 51 0 8 0.138732 4 52 0 8 0.149962 4 53 0 8 0.118556 5 14 0 8 0.0465863 5 15 0 8 0.0964797 5 16 0 8 0.169063 5 17 0 8 0.163033 5 18 0 8 0.0624691 5 19 0 8 0.0701216 5 20 0 8 0.192404 5 21 0 8 0.266023 5 22 0 8 0.0545965 5 23 0 8 0.119543 5 25 0 8 0.0743367 5 26 0 8 0.163946 5 29 0 8 0.1459 5 30 0 8 0.205013 5 31 0 8 0.0610422 5 33 0 8 0.123316 5 34 0 8 0.125925 5 39 0 8 0.0813515 5 40 0 8 0.0382294 5 41 0 8 0.0659346 5 42 0 8 0.0726887 5 43 0 8 0.132597 5 44 0 8 0.109306 5 45 0 8 0.097616 5 46 0 8 0.0438025 5 47 0 8 0.0497553 5 48 0 8 0.0407517 5 49 0 8 0.0645785 5 50 0 8 0.0834572 5 51 0 8 0.186139 5 52 0 8 0.34039 5 53 0 8 0.153276 6 15 0 8 0.0462261 6 16 0 8 0.150887 6 17 0 8 0.189614 6 18 0 8 0.038218 6 19 0 8 0.0931989 6 20 0 8 0.205782 6 21 0 8 0.247714 6 22 0 8 0.021864 6 23 0 8 0.0576759 6 25 0 8 0.0412844 6 26 0 8 0.117993 6 29 0 8 0.214182 6 30 0 8 0.22775 6 33 0 8 0.159055 6 34 0 8 0.182272 6 39 0 8 0.0721673 6 40 0 8 0.0399217 6 41 0 8 0.0532476 6 42 0 8 0.0998225 6 43 0 8 0.0825467 6 44 0 8 0.0742794 6 45 0 8 0.0827558 6 46 0 8 0.0344198 6 47 0 8 0.0203483 6 48 0 8 0.0340748 6 49 0 8 0.0683323 6 50 0 8 0.0443651 6 51 0 8 0.0892393 6 52 0 8 0.152154 6 53 0 8 0.0596526 7 16 0 8 0.186733 7 17 0 8 0.239111 7 18 0 8 0.0445602 7 19 0 8 0.115943 7 20 0 8 0.218846 7 21 0 8 0.23155 7 22 0 8 0.0243204 7 23 0 8 0.062416 7 25 0 8 0.0549698 7 26 0 8 0.137503 7 27 0 8 0.0822159 7 29 0 8 0.208204 7 30 0 8 0.227171 7 31 0 8 0.093816 7 32 0 8 0.0308163 7 33 0 8 0.158016 7 34 0 8 0.201484 7 38 0 8 0.0560126 7 39 0 8 0.0751048 7 40 0 8 0.0520166 7 41 0 8 0.0747731 7 42 0 8 0.132817 7 43 0 8 0.111513 7 44 0 8 0.0851446 7 45 0 8 0.0850361 7 46 0 8 0.0502512 7 47 0 8 0.0302002 7 48 0 8 0.0530245 7 49 0 8 0.0980905 7 50 0 8 0.0628354 7 51 0 8 0.0995416 7 52 0 8 0.166457 7 53 0 8 0.072679 8 17 0 8 0.049096 8 19 0 8 0.0456999 8 20 0 8 0.0681742 8 21 0 8 0.0723058 8 23 0 8 0.0491638 8 25 0 8 0.0746954 8 26 0 8 0.120291 8 29 0 8 0.0498282 8 30 0 8 0.0428569 8 33 0 8 0.0429325 8 39 0 8 0.075957 8 40 0 8 0.0552852 8 41 0 8 0.158736 8 42 0 8 0.12972 8 43 0 8 0.159139 8 44 0 8 0.113244 8 45 0 8 0.0569147 8 46 0 8 0.0495173 8 47 0 8 0.0541302 8 48 0 8 0.0609476 8 49 0 8 0.0774165 8 50 0 8 0.122697 8 51 0 8 0.110099 8 52 0 8 0.135505 8 53 0 8 0.0818144 9 19 0 8 0.0367065 9 20 0 8 0.146602 9 21 0 8 0.0579772 9 23 0 8 0.0347865 9 25 0 8 0.0432265 9 26 0 8 0.075764 9 29 0 8 0.0770223 9 30 0 8 0.128473 9 33 0 8 0.0702466 9 34 0 8 0.0429923 9 38 0 8 0.0939787 9 39 0 8 0.0512578 9 40 0 8 0.0539268 9 41 0 8 0.0742811 9 42 0 8 0.100624 9 43 0 8 0.0863646 9 44 0 8 0.0696534 9 45 0 8 0.117455 9 46 0 8 0.0862941 9 47 0 8 0.0292039 9 48 0 8 0.105288 9 49 0 8 0.134241 9 50 0 8 0.0567506 9 51 0 8 0.0831928 9 52 0 8 0.0993807 9 53 0 8 0.0641363 10 20 0 8 0.0174534 10 41 0 8 0.0435204 10 42 0 8 0.0457647 10 43 0 8 0.0482625 10 44 0 8 0.0441823 10 45 0 8 0.0566361 10 47 0 8 0.0214258 10 48 0 8 0.037122 10 49 0 8 0.0336045 10 50 0 8 0.036067 10 51 0 8 0.0494731 10 52 0 8 0.0419894 11 20 0 8 0.0134583 11 41 0 8 0.0332464 11 42 0 8 0.0377835 11 43 0 8 0.0358688 11 44 0 8 0.0384637 11 45 0 8 0.048821 11 47 0 8 0.0161214 11 48 0 8 0.0277069 11 49 0 8 0.0254424 11 50 0 8 0.0207964 11 51 0 8 0.0349856 11 52 0 8 0.0293187 12 21 0 8 0.0452503 12 22 0 8 0.00949369 12 23 0 8 0.0258843 12 25 0 8 0.023233 12 26 0 8 0.0819746 12 27 0 8 0.0217219 12 29 0 8 0.0756162 12 30 0 8 0.0547423 12 31 0 8 0.0126846 12 32 0 8 0.0095029 12 33 0 8 0.0550783 12 34 0 8 0.0358261 12 39 0 8 0.0534233 12 41 0 8 0.0501581 12 42 0 8 0.0642526 12 43 0 8 0.0585111 12 44 0 8 0.042162 12 45 0 8 0.0628139 12 47 0 8 0.0200631 12 48 0 8 0.0404415 12 49 0 8 0.0439569 12 50 0 8 0.0333015 12 51 0 8 0.05012 12 52 0 8 0.0515474 12 53 0 8 0.0347132 13 23 0 8 0.0173968 13 25 0 8 0.0211246 13 26 0 8 0.0784471 13 29 0 8 0.0426671 13 30 0 8 0.0335429 13 33 0 8 0.0360604 13 39 0 8 0.031684 13 41 0 8 0.0410287 13 42 0 8 0.0518195 13 43 0 8 0.0434307 13 44 0 8 0.0346827 13 45 0 8 0.0521094 13 47 0 8 0.017097 13 48 0 8 0.0423334 13 49 0 8 0.0349978 13 50 0 8 0.0412593 13 51 0 8 0.0529885 13 52 0 8 0.0480842 14 23 0 8 0.00753225 14 26 0 8 0.0276349 14 29 0 8 0.035592 14 41 0 8 0.0183958 14 43 0 8 0.0212172 14 45 0 8 0.0329602 14 49 0 8 0.018785 15 25 0 8 0.0139636 15 26 0 8 0.0450743 15 29 0 8 0.0103974 15 30 0 8 0.0119942 15 33 0 8 0.00956533 15 41 0 8 0.0269212 15 43 0 8 0.0299688 15 44 0 8 0.0319692 15 45 0 8 0.0287533 15 47 0 8 0.0152575 15 49 0 8 0.0157758 15 50 0 8 0.0230872 15 51 0 8 0.0335791 15 52 0 8 0.0280748 16 25 0 8 0.0235633 16 26 0 8 0.124232 16 27 0 8 0.027435 16 28 0 8 0.00982081 16 29 0 8 0.0968792 16 30 0 8 0.154798 16 31 0 8 0.0156516 16 32 0 8 0.0225025 16 33 0 8 0.0571344 16 34 0 8 0.0421608 16 39 0 8 0.0490646 16 41 0 8 0.0554422 16 42 0 8 0.0440112 16 43 0 8 0.0585857 16 44 0 8 0.0424397 16 45 0 8 0.0942857 16 47 0 8 0.0220182 16 48 0 8 0.0753944 16 49 0 8 0.0904764 16 50 0 8 0.0366824 16 51 0 8 0.0504578 16 52 0 8 0.0467929 16 53 0 8 0.030347 17 26 0 8 0.129223 17 27 0 8 0.0340597 17 28 0 8 0.0108742 17 29 0 8 0.215844 17 30 0 8 0.141535 17 31 0 8 0.0239219 17 32 0 8 0.0159523 17 33 0 8 0.20926 17 34 0 8 0.0700283 17 35 0 8 0.0181605 17 36 0 8 0.0149265 17 38 0 8 0.040679 17 39 0 8 0.0625763 17 41 0 8 0.0490129 17 42 0 8 0.0635976 17 43 0 8 0.0619263 17 44 0 8 0.0436824 17 45 0 8 0.0840439 17 47 0 8 0.0173354 17 48 0 8 0.0552306 17 49 0 8 0.0729063 17 50 0 8 0.0354877 17 51 0 8 0.0561749 17 52 0 8 0.0596611 17 53 0 8 0.0329135 18 29 0 8 0.0188347 18 30 0 8 0.0376093 18 33 0 8 0.0142218 18 34 0 8 0.0106979 18 39 0 8 0.0189019 18 41 0 8 0.0251863 18 43 0 8 0.0268312 18 45 0 8 0.0462844 18 47 0 8 0.0117846 18 48 0 8 0.0440663 18 49 0 8 0.0364701 18 50 0 8 0.0178773 18 51 0 8 0.0269874 18 52 0 8 0.0253874 19 29 0 8 0.0330147 19 30 0 8 0.0313495 19 33 0 8 0.0264584 19 41 0 8 0.0424107 19 43 0 8 0.0448824 19 45 0 8 0.0471026 19 47 0 8 0.0201513 19 49 0 8 0.0294683 19 50 0 8 0.0341781 19 51 0 8 0.0426734 19 52 0 8 0.0339016 20 29 0 8 0.124593 20 30 0 8 0.266864 20 31 0 8 0.0265412 20 32 0 8 0.0446555 20 33 0 8 0.102804 20 34 0 8 0.0780588 20 39 0 8 0.0680238 20 41 0 8 0.0635074 20 42 0 8 0.0506611 20 43 0 8 0.0810762 20 44 0 8 0.0468594 20 45 0 8 0.20092 20 47 0 8 0.0205525 20 48 0 8 0.127149 20 49 0 8 0.118251 20 50 0 8 0.0424421 20 51 0 8 0.0603517 20 52 0 8 0.0737802 20 53 0 8 0.0346321 21 30 0 8 0.132006 21 31 0 8 0.0177705 21 32 0 8 0.0132177 21 33 0 8 0.0483288 21 34 0 8 0.065202 21 35 0 8 0.011709 21 36 0 8 0.0100165 21 38 0 8 0.0296989 21 39 0 8 0.124171 21 41 0 8 0.0768353 21 42 0 8 0.0549329 21 43 0 8 0.103104 21 44 0 8 0.0650038 21 45 0 8 0.0736023 21 47 0 8 0.0307498 21 48 0 8 0.0398875 21 49 0 8 0.0547819 21 50 0 8 0.100466 21 51 0 8 0.0768706 21 52 0 8 0.114311 21 53 0 8 0.0463454 22 33 0 8 0.00813957 22 39 0 8 0.0204703 22 41 0 8 0.0428693 22 42 0 8 0.0349857 22 43 0 8 0.0407403 22 44 0 8 0.0328747 22 45 0 8 0.0166664 22 47 0 8 0.0126192 22 48 0 8 0.0130792 22 49 0 8 0.0117284 22 50 0 8 0.0306034 22 51 0 8 0.0329342 22 52 0 8 0.0279057 23 32 0 8 0.010812 23 33 0 8 0.0378537 23 34 0 8 0.0397108 23 35 0 8 0.0105304 23 36 0 8 0.00869854 23 37 0 8 0.0197773 23 39 0 8 0.0810894 23 41 0 8 0.0894212 23 42 0 8 0.0533045 23 43 0 8 0.0883216 23 44 0 8 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0.281282 41 52 0 8 0.293342 41 53 0 8 0.305844 42 51 0 8 0.316092 42 52 0 8 0.350434 42 53 0 8 0.300973 43 52 0 8 0.539865 43 53 0 8 0.321572 44 53 0 8 0.118348 END